@prefix : .
@prefix dc: .
@prefix ns: .
@prefix obo: .
@prefix owl: .
@prefix rdf: .
@prefix xml: .
@prefix xsd: .
@prefix foaf: .
@prefix rdfs: .
@prefix skos: .
@prefix terms: .
@prefix oboInOwl: .
@prefix ontology: .
@base .
rdf:type owl:Ontology ;
owl:versionIRI ;
owl:imports ;
dc:creator ,
,
;
dc:description """ExaMode focuses on histopathological diagnosis of tissues with the aim of detecting diseases. We take into account the future cancer incidence and mortality burden worldwide which is predicted to be increasing (by 63% from 2018 until 2040); hence, we decided to focus our attention mainly on four use-cases: Colon cancer, Cervix cancer, Lung cancer, Celiac disease
In this ontology we model the main aspects concerning these diseases and the patients' histopathological reports concerning them.
The focus of the ontology is on the pathological report and not on the diseases and their modeling. The reports can have a positive, negative or inconclusive outcome. The ExaMode ontology defines a formal classification schema to encode the medical reports in histopathology and to define the formal relationships between diseases, their anatomical locations and the procedures to withdrawn and analyse the human tissues.
We model the anatomical location of the disease, the main information about the disease itself and the procedure adopted to withdraw and analyse the tissues."""@en ;
dc:rights """Copyright 2020-2023 University of Padua, Italy
Licensed under the
Creative Commons Attribution 4.0 International License
https://creativecommons.org/licenses/by/4.0/
You may obtain a copy of the License at
https://creativecommons.org/licenses/by/4.0/legalcode
This work has been supported by the EXAMODE project
https://www.examode.eu/
funded by the European Union’s Horizon 2020 research and innovation programme
under the grant agreement No 825292"""@en ;
dc:title "The EXAMODE ontology"@en ;
terms:license ;
rdfs:comment "EXAMODE stands for Extreme-scale Analytics via Multimodal Ontology Discovery & Enhancement"@en ;
owl:versionInfo "This ontology is encoded in OWL 2 DL"@en .
#################################################################
# Annotation properties
#################################################################
### http://purl.obolibrary.org/obo/NCIT_P106
obo:NCIT_P106 rdf:type owl:AnnotationProperty ;
oboInOwl:hasExactSynonym "Semantic_Type"@en ;
rdfs:comment "In general, applying semantic types aids in allowing users (or computer programs) to draw conclusions about concepts by virtue of the categories to which they have been assigned. We use a set of semantic types developed for the UMLS Metathesaurus. There are currently 134 semantic types in the UMLS. NB: this property is different from hasSemanticArea since this property serves as an annotation to give, when possible, a label indicating the semantic type. This label is taken from Ontobee. hasSemanticArea is used instead to give a tag to every entity, identifying what type of entity that is."@en ,
"Used to specify the semantic type of something."@en ;
rdfs:label "ha tipo semantico"@it ,
"has semantic type"@en ,
"heeft een semantisch type"@nl ;
ontology:definition "A property that represents a description of the sort of thing or category to which a concept belongs in the context of the UMLS semantic network."@en ;
rdfs:range xsd:string ;
rdfs:domain owl:Thing .
### http://purl.obolibrary.org/obo/NCIT_P325
obo:NCIT_P325 rdf:type owl:AnnotationProperty ;
rdfs:comment "To give an alternative definition (coming from another authoritative source) to the annotated entity."@en ;
rdfs:label "alternatieve definitie"@nl ,
"alternative definition"@en ,
"definzione alternativa"@it ;
rdfs:subPropertyOf ontology:definition ;
rdfs:range xsd:string ;
rdfs:domain owl:Thing .
### http://purl.obolibrary.org/obo/UBPROP_0000001
obo:UBPROP_0000001 rdf:type owl:AnnotationProperty ;
rdfs:comment "A definition coming from a source external to the ones commonly used in Examode, or from a non-authoritative one."@en ;
rdfs:label "definizione esterna"@it ,
"external definition"@en ,
"externe definitie"@nl ;
rdfs:subPropertyOf ontology:definition .
### http://purl.obolibrary.org/obo/UBPROP_0000010
obo:UBPROP_0000010 rdf:type owl:AnnotationProperty ;
rdfs:comment "Notes about the structure of some entity, e.g. a location or an intervention."@en ;
rdfs:label "note strutturali"@it ,
"structure notes"@en ,
"structurele opmerkingen"@nl ;
rdfs:subPropertyOf ontology:definition ;
rdfs:range xsd:string ;
rdfs:domain owl:Thing .
### http://purl.org/dc/elements/1.1/creator
dc:creator rdf:type owl:AnnotationProperty .
### http://purl.org/dc/elements/1.1/description
dc:description rdf:type owl:AnnotationProperty .
### http://purl.org/dc/elements/1.1/rights
dc:rights rdf:type owl:AnnotationProperty .
### http://purl.org/dc/elements/1.1/title
dc:title rdf:type owl:AnnotationProperty .
### http://purl.org/dc/terms/conformsTo
terms:conformsTo rdf:type owl:AnnotationProperty .
### http://purl.org/dc/terms/license
terms:license rdf:type owl:AnnotationProperty .
### http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym
oboInOwl:hasBroadSynonym rdf:type owl:AnnotationProperty ;
rdfs:comment "A property to connect an entity to broad synobyms." ;
rdfs:label "ha sinonimi generici"@it ,
"has broad synonym"@en ,
"heeft een breed synoniem"@nl ;
rdfs:subPropertyOf oboInOwl:hasSynonym ;
rdfs:range xsd:string ;
rdfs:domain owl:Thing .
### http://www.geneontology.org/formats/oboInOwl#hasExactSynonym
oboInOwl:hasExactSynonym rdf:type owl:AnnotationProperty ;
rdfs:comment "An alias in which the alias exhibits true synonymy."@en ;
rdfs:label "ha sinonimi esatti"@it ,
"has exact synonym"@en ,
"heeft een exact synoniem"@nl ;
rdfs:subPropertyOf oboInOwl:hasSynonym ;
rdfs:range xsd:string ;
rdfs:domain owl:Thing .
### http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym
oboInOwl:hasRelatedSynonym rdf:type owl:AnnotationProperty ;
rdfs:comment "To connect an entity to sinonims that are only related to it, and not completely equivalent to it." ;
rdfs:label "ha sinonimi correlati"@it ,
"has related synonym"@en ,
"heeft verwant synoniem"@nl ;
rdfs:subPropertyOf oboInOwl:hasSynonym ;
rdfs:range xsd:string ;
rdfs:domain owl:Thing .
### http://www.geneontology.org/formats/oboInOwl#hasSynonym
oboInOwl:hasSynonym rdf:type owl:AnnotationProperty ;
rdfs:comment "To connect an entity to strings representing synonims to the xsd:string given as label. They should be accompanies by the annotation specifying the corresponding language." ;
rdfs:label "ha sinonimo"@it ,
"has synonym"@en ,
"heeft synoniem"@nl ;
rdfs:range xsd:string ;
rdfs:domain owl:Thing .
### http://www.w3.org/2002/07/owl#cardinality
owl:cardinality rdf:type owl:AnnotationProperty ;
rdfs:comment """The cardinality constraint owl:cardinality is a built-in OWL property that links a restriction class to a data value belonging to the range of the XML Schema datatype nonNegativeInteger. A restriction containing an owl:cardinality constraint describes a class of all individuals that have exactly N semantically distinct values (individuals or data values) for the property concerned, where N is the value of the cardinality constraint. Syntactically, the cardinality constraint is represented as an RDF property element with the corresponding rdf:datatype attribute.
This construct is in fact redundant as it can always be replaced by a pair of matching owl:minCardinality and owl:maxCardinality constraints with the same value. It is included as a convenient shorthand for the user.
The following example describes a class of individuals that have exactly two parents:
2
""" ;
rdfs:range xsd:nonNegativeInteger ;
rdfs:domain owl:Thing .
### http://www.w3.org/2002/07/owl#maxCardinality
owl:maxCardinality rdf:type owl:AnnotationProperty ;
rdfs:comment """The cardinality constraint owl:maxCardinality is a built-in OWL property that links a restriction class to a data value belonging to the value space of the XML Schema datatype nonNegativeInteger. A restriction containing an owl:maxCardinality constraint describes a class of all individuals that have at most N semantically distinct values (individuals or data values) for the property concerned, where N is the value of the cardinality constraint. Syntactically, the cardinality constraint is represented as an RDF property element with the corresponding rdf:datatype attribute.
The following example describes a class of individuals that have at most two parents:
2
""" ;
rdfs:range xsd:nonNegativeInteger ;
rdfs:domain owl:Thing .
### http://www.w3.org/2002/07/owl#minCardinality
owl:minCardinality rdf:type owl:AnnotationProperty ;
rdfs:comment """The cardinality constraint owl:minCardinality is a built-in OWL property that links a restriction class to a data value belonging to the value space of the XML Schema datatype nonNegativeInteger. A restriction containing an owl:minCardinality constraint describes a class of all individuals that have at least N semantically distinct values (individuals or data values) for the property concerned, where N is the value of the cardinality constraint. Syntactically, the cardinality constraint is represented as an RDF property element with the corresponding rdf:datatype attribute.
The following example describes a class of individuals that have at least two parents:
2
Note that an owl:minCardinality of one or more means that all instances of the class must have a value for the property.""" ;
rdfs:range xsd:nonNegativeInteger ;
rdfs:domain owl:Thing .
### http://www.w3.org/2003/06/sw-vocab-status/ns#term_status
ns:term_status rdf:type owl:AnnotationProperty .
### http://xmlns.com/foaf/0.1/name
foaf:name rdf:type owl:AnnotationProperty .
### https://w3id.org/examode/ontology/annotatedRule
ontology:annotatedRule rdf:type owl:AnnotationProperty ;
rdfs:comment """This property is used to annotated classes with a comment representing the rule that we inferred during the process of definition of this ontology. This rule may be implemented to extract entities from a clinical case record.
NB: we do not guarantee that these rules are always valid, or that they are the only valid. It may be the case that they are inaccurate since we were only able to infer them from the cases that were provided to us. Treat these annotations only as a documentation of our process and for a first implementation of the entities extractor."""@en ;
rdfs:label "annotated rule"@en ,
"annotatieregel"@nl ,
"regola per l'annotazione"@it ;
rdfs:range xsd:string ;
rdfs:domain owl:Thing .
### https://w3id.org/examode/ontology/associatedDisease
ontology:associatedDisease rdf:type owl:AnnotationProperty ;
rdfs:comment "In this ontologies different entities were developed to deal with specific entities. This property is used to link one entity to the corresponding disease it was defined for. It is just some more information to keep track of the nature of entities and to what disease they originally belong."@en ;
rdfs:label "associated disease"@en ,
"geassocieerde ziekte"@nl ,
"malattia associata"@it ;
rdfs:range ontology:Disease ;
rdfs:domain owl:Thing .
### https://w3id.org/examode/ontology/associatedKeywordInDiagnosis
ontology:associatedKeywordInDiagnosis rdf:type owl:AnnotationProperty ;
rdfs:comment "Property to take notes (for reminding us/ help us define rule/ maybe do some reasoning in the future) about which keywords to look for in the Diagnosis"@en ;
rdfs:label "associated keyword in diagnosis"@en ,
"bijbehorende trefwoorden in de diagnose"@nl ,
"parole chiave associate nella diagnosi"@it ;
rdfs:range xsd:string ;
rdfs:domain owl:Thing .
### https://w3id.org/examode/ontology/associatedKeywordInMateriali
ontology:associatedKeywordInMateriali rdf:type owl:AnnotationProperty ;
rdfs:comment "Connects one class (a location or a intervention) to the keyword in the field Materiali that, if found, indicates the presence of that class."@en ;
rdfs:label "associated keyword in materiali"@en ,
"bijbehorende trefwoorden in het veld materialen"@nl ,
"parole chiave associate nel field materiali"@it ;
rdfs:range xsd:string ;
rdfs:domain owl:Thing .
### https://w3id.org/examode/ontology/definition
ontology:definition rdf:type owl:AnnotationProperty ;
rdfs:comment "Property representing the definition in the ontobee website. In later versions of the ontology we prefer rdfs:comment since it is more universally used."@en ;
rdfs:label "definitie"@nl ,
"definition"@en ,
"definizione"@it ;
rdfs:range xsd:string ;
rdfs:domain owl:Thing .
### https://w3id.org/examode/ontology/hasOntobeeAnnotation
ontology:hasOntobeeAnnotation rdf:type owl:AnnotationProperty ;
rdfs:comment "A property to connect one entity to the annotations found for that entitiy in the corresponding page in Ontobee (http://www.ontobee.org/)."@en ;
rdfs:label "ha annotazione da Ontobee"@it ,
"has Ontobee annotation"@en ,
"heeft een record van Ontobee"@nl ;
rdfs:range xsd:string ;
rdfs:domain owl:Thing .
### https://w3id.org/examode/ontology/hasSNOMEDCode
ontology:hasSNOMEDCode rdf:type owl:AnnotationProperty ;
rdfs:comment "Use this property to annotate one entity with its corresponding SNOMED code."@en ;
rdfs:label "ha codice SNOMED"@it ,
"has SNOMED code"@en ,
"heeft SNOMED-code"@nl ;
rdfs:range xsd:string ;
rdfs:domain owl:Thing .
### https://w3id.org/examode/ontology/hasSemanticArea
ontology:hasSemanticArea rdf:type owl:AnnotationProperty ;
rdfs:comment "Connects one ontology class or Individual to the semantic area to which it belongs. For example, a Poly is a diagnosis, therefore the Polyp belongs to the semantic area of Diagnosis."@en ;
rdfs:label "has semantic area"@en ,
"presenta area semantica"@it ,
"presenteert semantisch gebied"@nl ;
rdfs:range ontology:SemanticArea ;
rdfs:domain owl:Thing .
### https://w3id.org/examode/ontology/internalNotes
ontology:internalNotes rdf:type owl:AnnotationProperty ;
rdfs:comment "Use this property to annotate a resource with some notes that may be useful to those who will work on building the ontology."@en ;
rdfs:label "internal notes"@en ,
"interne notities"@nl ,
"note interne"@it ;
rdfs:range xsd:string ;
rdfs:domain owl:Thing .
### https://w3id.org/examode/ontology/taxonNotes
ontology:taxonNotes rdf:type owl:AnnotationProperty ;
rdfs:comment "A field found sometimes for entities taken from Ontobee's ontologies. You can treat it as an ulterior/alternative definition."@en ;
rdfs:label "note tassonomiche"@it ,
"structurele opmerkinegen"@nl ,
"taxon notes"@en ;
rdfs:subPropertyOf ontology:definition ;
rdfs:range xsd:string ;
rdfs:domain owl:Thing .
#################################################################
# Object Properties
#################################################################
### http://www.w3.org/2004/02/skos/core#broader
skos:broader rdf:type owl:ObjectProperty .
### http://www.w3.org/2004/02/skos/core#related
skos:related rdf:type owl:ObjectProperty ,
owl:SymmetricProperty ;
rdfs:domain skos:Concept ;
rdfs:range skos:Concept ;
rdfs:isDefinedBy "skos vocabulary"@en ;
rdfs:label "related"@en .
### http://xmlns.com/foaf/0.1/made
foaf:made rdf:type owl:ObjectProperty ;
owl:inverseOf foaf:maker ;
rdfs:domain [ rdf:type owl:Class ;
owl:unionOf ( foaf:Agent
foaf:organization
)
] ;
rdfs:range ontology:ClinicalCaseReport .
### http://xmlns.com/foaf/0.1/maker
foaf:maker rdf:type owl:ObjectProperty ;
rdfs:domain ontology:ClinicalCaseReport ;
rdfs:range [ rdf:type owl:Class ;
owl:unionOf ( foaf:Agent
foaf:organization
)
] ;
rdfs:comment "An agent that made this thing." ,
"An agent that made this thing." ,
"In this ontology the property maker is used to connect a clinical case report to the organization that produced it. For future possibilities, we put domain and range to owl:Thing." ;
rdfs:isDefinedBy foaf: ;
rdfs:label "maker" ,
"maker"@en ,
"producent"@nl ,
"produttore"@it ;
ns:term_status "stable" ;
ontology:definition """The maker property relates something to a Agent that made it. As such it is an inverse of the made property.
The name (or other rdfs:label) of the maker of something can be described as the dc:creator of that thing.
For example, if the thing named by the URI http://danbri.org/ has a maker that is a Person whose name is 'Dan Brickley', we can conclude that http://danbri.org/ has a dc:creator of 'Dan Brickley'.""" ;
ontology:hasSemanticArea ontology:general .
### https://w3id.org/examode/ontology/detectedHPV
ontology:detectedHPV rdf:type owl:ObjectProperty ;
rdfs:domain ontology:CervixOutcome ;
rdfs:range ontology:HPVInfection ;
rdfs:comment "If this property is present, it signals the presence of a human papilloma virus (HPV) in the outcome. It needs to have as object the HPV infection named entity."@en ;
rdfs:label "detected HPV"@en ,
"gedetecteerd HPV"@nl ,
"identificato HPV"@it ;
ontology:associatedDisease obo:MONDO_0002974 ;
ontology:hasSemanticArea obo:NCIT_C15220 .
### https://w3id.org/examode/ontology/detectedKoilocyte
ontology:detectedKoilocyte rdf:type owl:ObjectProperty ;
rdfs:domain ontology:CervixOutcome ;
rdfs:range ontology:Koilocyte ;
rdfs:comment "Signals the presence of Koilocytotic Squamous Cell. It needs to have as object the Koilocytotic Squamous Cell named entity."@en ;
rdfs:label "detected koilocyte"@en ,
"gedetecteerd koylocite"@nl ,
"rilevati coilociti"@it ;
ontology:associatedDisease obo:MONDO_0002974 ;
ontology:hasSemanticArea obo:NCIT_C15220 .
### https://w3id.org/examode/ontology/hasAgeOnset
ontology:hasAgeOnset rdf:type owl:ObjectProperty ,
owl:FunctionalProperty ;
rdfs:domain ontology:Patient ;
rdfs:range ontology:Onset ;
rdfs:comment "Links one record to its age group, or \"onset\"."@en ;
rdfs:label "ha gruppo d'età"@it ,
"has age onset"@en ,
"heeft leeftijdsgroep"@nl ;
ontology:hasSemanticArea ontology:general .
### https://w3id.org/examode/ontology/hasClinicalCaseReport
ontology:hasClinicalCaseReport rdf:type owl:ObjectProperty ,
owl:SymmetricProperty ;
rdfs:domain ontology:Patient ;
rdfs:range ontology:ClinicalCaseReport ;
rdfs:comment "Connects one patient to its clinical case report."@en ;
rdfs:label "ha caso clinico"@it ,
"has clinical case report"@en ,
"heeft een klinische casus"@nl ;
ontology:hasSemanticArea ontology:general .
### https://w3id.org/examode/ontology/hasDysplasia
ontology:hasDysplasia rdf:type owl:ObjectProperty ;
rdfs:domain ontology:ColonPolyp ;
rdfs:range ontology:Dysplasia ;
rdfs:comment "Connects an instance of Polyp of Colon to a named individual of type Dysplasia. Cardinality between 0 and 1."@en ;
rdfs:label "has dysplasia"@en ,
"heeft dysplasie"@nl ,
"presenta displasia"@it ;
ontology:associatedDisease obo:MONDO_0002032 ;
ontology:hasSemanticArea obo:NCIT_C15220 .
### https://w3id.org/examode/ontology/hasGender
ontology:hasGender rdf:type owl:ObjectProperty ,
owl:FunctionalProperty ;
rdfs:domain ontology:Patient ;
rdfs:range ontology:Gender ;
rdfs:comment "To connect a record with the gender of the corresponding person." ;
rdfs:label "has gender"@en ,
"heeft geslacht"@nl ,
"presenta genere"@it ;
ontology:hasSemanticArea ontology:general .
### https://w3id.org/examode/ontology/hasIntervention
ontology:hasIntervention rdf:type owl:ObjectProperty ;
rdfs:domain ontology:Outcome ;
rdfs:range ontology:Intervention ;
rdfs:comment "A report is associated to an intervention (or procedure) that was performed to the patient to obtain the tissue used to study the presence (or absence) of the disease."@en ;
rdfs:label "has intervention"@en ,
"heeft tussenkomst"@nl ,
"intervento associato"@it ;
ontology:hasSemanticArea ontology:procedure .
### https://w3id.org/examode/ontology/hasInterventionType
ontology:hasInterventionType rdf:type owl:ObjectProperty ;
rdfs:domain ontology:Intervention ;
rdfs:range ontology:InterventionType ;
rdfs:comment "Connects an intervention (or procedure) to its type."@en ;
rdfs:label "has intervention type"@en ,
"soort tussenkomst"@nl ,
"tipo di intervento"@it ;
ontology:hasSemanticArea ontology:procedure .
### https://w3id.org/examode/ontology/hasLabFinding
ontology:hasLabFinding rdf:type owl:ObjectProperty ;
rdfs:domain ontology:CeliacClinicalCaseReport ;
rdfs:range ontology:LabFinding ;
rdfs:comment "Connects an instance of celiac outcome to an instance of laboratory finding or any of its subclasses."@en ;
rdfs:label "has laboratory finding"@en ,
"heeft laboratorium bevindingen"@nl ,
"presenta risultati di laboratorio"@it ;
ontology:hasSemanticArea obo:NCIT_C15220 .
### https://w3id.org/examode/ontology/hasLocation
ontology:hasLocation rdf:type owl:ObjectProperty ;
rdfs:domain [ rdf:type owl:Class ;
owl:unionOf ( ontology:Intervention
ontology:Outcome
)
] ;
rdfs:range ontology:AnatomicalEntity ;
rdfs:comment "A clinical case record has a location where it is positioned. This property connects an instance of clinical case report (of whatever type) or an Intervention to a location, a member of the class anatomical entity."@en ;
rdfs:label "has location"@en ,
"heeft locatie"@nl ,
"è localizzato in"@it ;
ontology:hasSemanticArea obo:NCIT_C13717 .
### https://w3id.org/examode/ontology/hasOutcome
ontology:hasOutcome rdf:type owl:ObjectProperty ,
owl:FunctionalProperty ;
rdfs:domain ontology:ClinicalCaseReport ;
rdfs:range ontology:Outcome ;
rdfs:comment "Every report has an outcome, whatever it may be (positive, negative, inconclusive etc.)" ;
rdfs:label "has outcome"@en ,
"heeft uitkomst"@nl ,
"presenta risultato"@it ;
ontology:hasSemanticArea obo:NCIT_C15220 .
### https://w3id.org/examode/ontology/hasSlide
ontology:hasSlide rdf:type owl:ObjectProperty ;
rdfs:domain ontology:ClinicalCaseReport ;
rdfs:range ontology:SlideDevice ;
rdfs:comment "Connects a clinical case report to one slide. This Slide class was generated due to the way Radbound deals with its data. Each patient is associated to one block. Each block is a diagnosis, and it can be associated to one or more slides that helped the medic to reach that diagnosis." ;
rdfs:label "has slide"@en ,
"heeft glijbaan"@nl ,
"presenta vetrino"@it ;
ontology:hasSemanticArea ontology:general .
### https://w3id.org/examode/ontology/hasTest
ontology:hasTest rdf:type owl:ObjectProperty ;
rdfs:domain ontology:Outcome ;
rdfs:range ontology:Test ;
rdfs:comment "The test performed."@en ;
rdfs:label "has test"@en ,
"heeft toets"@nl ,
"presenta test"@it ;
ontology:hasSemanticArea ontology:test .
### https://w3id.org/examode/ontology/inconclusiveType
ontology:inconclusiveType rdf:type owl:ObjectProperty ;
rdfs:domain ontology:InconclusiveOutcome ;
rdfs:range ontology:InconclusiveResultType ;
rdfs:comment "Connects an inconclusive outcome to its type."@en ;
rdfs:label "inconclusive result type"@en ,
"onduidelijk resultaattype"@nl ,
"tipo di risultato inconclusivo"@it ;
ontology:hasSemanticArea obo:NCIT_C15220 .
### https://w3id.org/examode/ontology/isAboutDisease
ontology:isAboutDisease rdf:type owl:ObjectProperty ,
owl:FunctionalProperty ;
rdfs:domain ontology:ClinicalCaseReport ;
rdfs:range ontology:Disease ;
rdfs:comment "This property is used to connect an instance of a clinical case to an instance of Disease. Thus, this property has as a range the disease and you should expect, every time you have a report, to have this property pointing to one of the four instances of disease."@en ;
rdfs:label "connesso alla malattia"@it ,
"handler om sygdom"@nl ,
"is about disease"@en ;
ontology:hasSemanticArea ontology:general .
### https://w3id.org/examode/ontology/isSpecificationOf
ontology:isSpecificationOf rdf:type owl:ObjectProperty .
### https://w3id.org/examode/ontology/positiveType
ontology:positiveType rdf:type owl:ObjectProperty ;
rdfs:domain ontology:PositiveOutcome ;
rdfs:range ontology:PositiveResultType ;
rdfs:comment "Connects a positive outcome to its type."@en ;
rdfs:label "positief resultaattype"@nl ,
"positive result type"@en ,
"tipo di risultato positivo"@it ;
ontology:hasSemanticArea obo:NCIT_C15220 .
### https://w3id.org/examode/ontology/presenceOf
ontology:presenceOf rdf:type owl:ObjectProperty ;
rdfs:domain [ rdf:type owl:Class ;
owl:unionOf ( ontology:CeliacClinicalCaseReport
ontology:LungCarcinoma
)
] ;
rdfs:range [ rdf:type owl:Class ;
owl:unionOf ( ontology:CeliacDiseaseFinding
ontology:LungCarcinomaFinding
)
] ;
rdfs:comment "This property is used to connect an outcome instance to a generic annotation which signals the presence of some more information correlating the clinical case. Such information may not be directly pertinent to the disease however it can be still linked to it." ;
rdfs:label "aanwezigheid van"@nl ,
"individuata presenza di"@it ,
"presence of"@en ;
ontology:hasSemanticArea obo:NCIT_C15220 .
### https://w3id.org/examode/ontology/presenceOfIntestinalAbnormality
ontology:presenceOfIntestinalAbnormality rdf:type owl:ObjectProperty ;
rdfs:domain ontology:CeliacOutcome ;
rdfs:range ontology:IntestinalAbnormality ;
rdfs:comment "Connects one celiac outcome to the intestinal abnormality detected in the specimen."@en ;
rdfs:label "aanwezigheid van darm afwijkingen"@nl ,
"individuata anomalia intestinale"@it ,
"presence of intestinal abnormality"@en ;
ontology:associatedDisease obo:MONDO_0005130 ;
ontology:hasSemanticArea obo:NCIT_C15220 .
#################################################################
# Data properties
#################################################################
### http://purl.org/dc/elements/1.1/identifier
dc:identifier rdf:type owl:DatatypeProperty ;
rdfs:domain ontology:ClinicalCaseReport ;
rdfs:range xsd:string ;
rdfs:comment """An unambiguous reference to the resource within a given context.
Property connecting a case to its id. It follows dublin core specification http://www.ukoln.ac.uk/metadata/dcmi-ieee/identifiers/, that says: Recommended practice is to identify the resource by means of a string conforming to an identification system. Examples include International Standard Book Number (ISBN), Digital Object Identifier (DOI), and Uniform Resource Name (URN). Persistent identifiers should be provided as HTTP URIs.
In this ontology it is supposed that this property connects a clinical case to a string representing an URL.""" ;
rdfs:label "identificatore"@it ,
"identifier"@en ,
"identifier"@nl ;
ontology:hasSemanticArea ontology:general .
### https://w3id.org/examode/ontology/MarshStage
ontology:MarshStage rdf:type owl:DatatypeProperty ,
owl:FunctionalProperty ;
rdfs:domain ontology:PositiveToCeliacDisease ;
rdfs:range [ rdf:type rdfs:Datatype ;
owl:oneOf [ rdf:type rdf:List ;
rdf:first "0" ;
rdf:rest [ rdf:type rdf:List ;
rdf:first "1" ;
rdf:rest [ rdf:type rdf:List ;
rdf:first "2" ;
rdf:rest [ rdf:type rdf:List ;
rdf:first "3a" ;
rdf:rest [ rdf:type rdf:List ;
rdf:first "3b" ;
rdf:rest [ rdf:type rdf:List ;
rdf:first "3c" ;
rdf:rest rdf:nil
]
]
]
]
]
]
] ;
rdfs:comment "The severity of celiac disease according to Marsh classification."@en ;
rdfs:label "classificazione di Marsh della malattia celiaca"@it ,
"gewijzigde Marsh-classificatie van histologische bevindingen bij coeliakie"@nl ,
"modified Marsh classification of histologic findings in celiac disease"@en ;
ontology:associatedDisease obo:MONDO_0005130 ;
ontology:hasSemanticArea obo:NCIT_C15220 .
### https://w3id.org/examode/ontology/duodenitisSeverity
ontology:duodenitisSeverity rdf:type owl:DatatypeProperty ,
owl:FunctionalProperty ;
rdfs:domain ontology:Duodenitis ;
rdfs:range xsd:string ;
rdfs:comment "The severity of the duodenitis."@en ;
rdfs:label "duodenitis severity"@en ,
"ernst van duodenitis"@nl ,
"gravità della duodenite"@it ;
ontology:associatedDisease obo:MONDO_0005130 ;
ontology:hasSemanticArea obo:NCIT_C15220 .
### https://w3id.org/examode/ontology/hasAge
ontology:hasAge rdf:type owl:DatatypeProperty ;
rdfs:domain ontology:Patient ;
rdfs:range xsd:integer ;
rdfs:comment "Connects the Report to the age of the patient." ;
rdfs:label "età"@it ,
"has age"@en ,
"heeft leeftijd"@nl ;
ontology:hasSemanticArea ontology:general .
### https://w3id.org/examode/ontology/hasBlockNumber
ontology:hasBlockNumber rdf:type owl:DatatypeProperty ,
owl:FunctionalProperty ;
rdfs:domain ontology:ClinicalCaseReport ;
rdfs:range xsd:integer ;
rdfs:comment "The block number identifies the part of the image connected to the diagnosis (for Radbound). For AOEC this property is not necessary. We use it to contain the \"internal id\"."@en ;
rdfs:label "ha numero di blocco"@it ,
"has block number"@en ,
"heeft bloknummer"@nl ;
ontology:hasSemanticArea ontology:general .
### https://w3id.org/examode/ontology/hasDiagnosisText
ontology:hasDiagnosisText rdf:type owl:DatatypeProperty ;
rdfs:domain ontology:ClinicalCaseReport ;
rdfs:range xsd:string ;
rdfs:comment "Connects an instance of clinical case to its diagnosis, i.e. the text written by the doctor."@nl ;
rdfs:label "has textual diagnosis"@en ,
"presenta campo diagnosi"@it ,
"presenteert diagnoseveld"@nl ;
ontology:hasSemanticArea ontology:general .
### https://w3id.org/examode/ontology/hasFlatVilli
ontology:hasFlatVilli rdf:type owl:DatatypeProperty ;
rdfs:domain ontology:VilliFinding ;
rdfs:range xsd:boolean ;
terms:conformsTo ;
rdfs:comment "Whether the specimen presents falttened villi."@en ;
rdfs:label "has flattened villi"@en ,
"heeft afgeplatte villi"@nl ,
"presenta villi appiattiti"@it ;
rdfs:seeAlso ;
ontology:associatedDisease obo:MONDO_0005130 ;
ontology:associatedKeywordInDiagnosis "villi appiattiti, appiattimento dei villi" ;
ontology:hasSemanticArea obo:NCIT_C15220 .
### https://w3id.org/examode/ontology/hasIEL
ontology:hasIEL rdf:type owl:DatatypeProperty ;
rdfs:domain ontology:OtherFinding ;
rdfs:range xsd:string ;
terms:conformsTo ;
rdfs:comment "The determination of the number of the intraepithelial lymphocytes in a sample. [Definition Source: NCI]"@en ;
rdfs:isDefinedBy obo:NCIT_C184424 ;
rdfs:label "intra-epitheliale lymfocythoeveelheid"@nl ,
"intraepithelial lymphocyte count"@en ,
"quantità di linfociti intraeppiteliali"@it ;
ontology:associatedDisease obo:MONDO_0005130 ;
ontology:associatedKeywordInDiagnosis "LIE, ILE, “linfociti intraepiteliali pari a”, “linfociti”, ”entorociti\""@it ;
ontology:hasSemanticArea obo:NCIT_C15220 .
### https://w3id.org/examode/ontology/hasImage
ontology:hasImage rdf:type owl:DatatypeProperty ,
owl:FunctionalProperty ;
rdfs:domain ontology:ClinicalCaseReport ;
rdfs:range xsd:string ;
rdfs:comment "Connects a clinical case report to the name of its corresponding image (the name of the image, e.g. the name of the file)."@en ;
rdfs:label "has image"@en ,
"huidige afbeelding"@nl ,
"presenta immagine"@it ;
ontology:hasSemanticArea ontology:general .
### https://w3id.org/examode/ontology/hasInternalIdentifier
ontology:hasInternalIdentifier rdf:type owl:DatatypeProperty ;
rdfs:domain ontology:ClinicalCaseReport ;
rdfs:range xsd:anyURI ;
rdfs:comment "Connects a clinical case with the its ID used inside the ExaMode project. This property was thought to connect a case to its id given by the hospitals. In this ontology we use the dc:identifier property to connect one case with an URL identifying it."@nl ;
rdfs:label "has Internal Identifier"@en ,
"heeft interne ID"@nl ,
"presenta identificatore interno"@it ;
ontology:hasSemanticArea ontology:general .
### https://w3id.org/examode/ontology/hasSlideDiagnosis
ontology:hasSlideDiagnosis rdf:type owl:DatatypeProperty ;
rdfs:domain ontology:SlideDevice ;
rdfs:range xsd:string ;
rdfs:comment "Each slide can be associated to its own diagnosis."@en ;
rdfs:label "has slide diagnosis"@en ,
"heeft dia-geassocieerde diagnose"@nl ,
"presenta diagnosi associata al vetrino"@it ;
ontology:hasSemanticArea ontology:general .
### https://w3id.org/examode/ontology/hasSlideId
ontology:hasSlideId rdf:type owl:DatatypeProperty ;
rdfs:domain ontology:SlideDevice ;
rdfs:range xsd:string ;
rdfs:comment "Each slide is associated to its own id"@en ;
rdfs:label "has slide id"@en ,
"presenta id vetrino"@it ,
"presenteert dia-id"@nl ;
ontology:hasSemanticArea ontology:general .
### https://w3id.org/examode/ontology/hasValue
ontology:hasValue rdf:type owl:DatatypeProperty ,
owl:FunctionalProperty ;
rdfs:domain ontology:KI67 ;
rdfs:range xsd:float ;
rdfs:comment "Connects a immunohistochemical test to its float value"@en ;
rdfs:label "has value"@en ,
"presenta valore"@it ,
"presenta valore"@nl ;
ontology:hasSemanticArea ontology:test .
### https://w3id.org/examode/ontology/hasVillusCryptRatio
ontology:hasVillusCryptRatio rdf:type owl:DatatypeProperty ;
rdfs:domain ontology:VilliFinding ;
rdfs:range xsd:string ;
rdfs:comment "Ratio of villous height to crypt or Lieberkuhn depth"@en ;
rdfs:label "rapporto villi / cripte di Lieberkhun"@it ,
"villi to crypt of Lieberkuhn ratio"@en ,
"villi tot crypte van Lieberkuhn ratio"@nl ;
ontology:associatedDisease obo:MONDO_0005130 ;
ontology:associatedKeywordInDiagnosis "check the presence of keywords “Rapporto villo cripta”"@en ;
ontology:hasSemanticArea obo:NCIT_C15220 .
### https://w3id.org/examode/ontology/mitosisPerCrypt
ontology:mitosisPerCrypt rdf:type owl:DatatypeProperty ;
rdfs:domain ontology:OtherFinding ;
rdfs:range xsd:string ;
rdfs:label "aantal mitoses per crypte"@nl ,
"number of mitosis per crypt"@en ,
"numero di mitosi per cripta"@it ;
ontology:associatedDisease obo:MONDO_0005130 ;
ontology:associatedKeywordInDiagnosis "numero di mitosi per cripta" ;
ontology:hasSemanticArea obo:NCIT_C15220 .
### https://w3id.org/examode/ontology/outcome
ontology:outcome rdf:type owl:DatatypeProperty ,
owl:FunctionalProperty ;
rdfs:domain [ rdf:type owl:Class ;
owl:unionOf ( ontology:CD10
ontology:CD3
ontology:CD45
ontology:CK19
ontology:CK20
ontology:CK34BE12
ontology:CK56
ontology:CK59
ontology:CK7
ontology:CMGA
ontology:DSC3
ontology:Immunoprecipitation
ontology:NAPSA
ontology:P40
ontology:P63
ontology:PSPB
ontology:SYPH
ontology:TTF1
ontology:VIME
)
] ;
rdfs:range xsd:boolean ;
rdfs:comment "Connects one immunohistochemical test to its boolean value."@en ;
rdfs:label "has outcome"@en ,
"presenta outcome"@it ,
"presenteert resultaten"@nl ;
ontology:hasSemanticArea ontology:test .
### https://w3id.org/examode/ontology/testResult
ontology:testResult rdf:type owl:DatatypeProperty ,
owl:FunctionalProperty ;
rdfs:domain ontology:HER2 ;
rdfs:range xsd:string ;
rdfs:comment "Connects one immunohistochemical test to its string result."@en ;
rdfs:label "has test result"@en ,
"heeft een testresultaat"@nl ,
"presenta risultato"@it ;
ontology:hasSemanticArea ontology:test .
### https://w3id.org/examode/ontology/villiAbsence
ontology:villiAbsence rdf:type owl:DatatypeProperty ,
owl:FunctionalProperty ;
rdfs:domain ontology:VilliFinding ;
rdfs:range xsd:boolean ;
rdfs:comment "Whether the tissue is without villi."@en ;
rdfs:label "absence of villi"@en ,
"afwezigheid van villi"@nl ,
"assenza di villi"@it ;
ontology:associatedDisease obo:MONDO_0005130 ;
ontology:associatedKeywordInDiagnosis "priva di villi" ;
ontology:hasSemanticArea obo:NCIT_C15220 .
### https://w3id.org/examode/ontology/villiAtrophy
ontology:villiAtrophy rdf:type owl:DatatypeProperty ;
rdfs:domain ontology:VilliFinding ;
rdfs:range [ rdf:type rdfs:Datatype ;
owl:oneOf [ rdf:type rdf:List ;
rdf:first "focal"@en ;
rdf:rest [ rdf:type rdf:List ;
rdf:first "mild"@en ;
rdf:rest [ rdf:type rdf:List ;
rdf:first "mild to moderate"@en ;
rdf:rest [ rdf:type rdf:List ;
rdf:first "moderate"@en ;
rdf:rest [ rdf:type rdf:List ;
rdf:first "moderate-severe"@en ;
rdf:rest [ rdf:type rdf:List ;
rdf:first "not specified"@en ;
rdf:rest [ rdf:type rdf:List ;
rdf:first "severe"@en ;
rdf:rest [ rdf:type rdf:List ;
rdf:first "total"@en ;
rdf:rest rdf:nil
]
]
]
]
]
]
]
]
] ;
terms:conformsTo ;
rdfs:comment "The degree of atrophy of villi."@en ;
rdfs:label "grado di atrofia dei villi"@it ,
"villi atrofie graad"@nl ,
"villi degree of atrophy"@en ;
ontology:associatedDisease obo:MONDO_0005130 ;
ontology:associatedKeywordInDiagnosis "atrofia dei villi" ;
ontology:hasSemanticArea obo:NCIT_C15220 .
### https://w3id.org/examode/ontology/villiStatus
ontology:villiStatus rdf:type owl:DatatypeProperty ;
rdfs:domain ontology:VilliFinding ;
rdfs:range xsd:string ;
rdfs:comment "The distance from point to point along the longest axis of the finger-like projections of the mucosal layer of the duodenum."@en ;
rdfs:isDefinedBy obo:VT_0010209 ;
rdfs:label "duodenum villi lengte"@nl ,
"duodenum villi length"@en ,
"lunghezza dei villi del duodeno"@it ;
ontology:associatedDisease obo:MONDO_0005130 ;
ontology:associatedKeywordInDiagnosis "\"villi\" + characterization"@en ;
ontology:hasSemanticArea obo:NCIT_C15220 .
#################################################################
# Classes
#################################################################
### http://www.w3.org/2000/10/swap/pim/contact#Person
rdf:type owl:Class .
### http://www.w3.org/2004/02/skos/core#Concept
skos:Concept rdf:type owl:Class ;
rdfs:comment "An abstract idea or notion; a unit of thought."@en .
### http://xmlns.com/foaf/0.1/Agent
foaf:Agent rdf:type owl:Class .
### http://xmlns.com/foaf/0.1/organization
foaf:organization rdf:type owl:Class ;
obo:NCIT_P106 ;
rdfs:comment "An organization that, in the context of the ExaMode program, provides clinical case records. It is usually an Hospital (e.g. AOEC or Radbound)." ;
rdfs:isDefinedBy ;
rdfs:label "Organisatie"@nl ,
"Organization"@en ,
"Organizzazione"@it ;
ontology:hasSemanticArea ontology:General ,
ontology:general .
### https://dbpedia.org/ontology/institution
rdf:type owl:Class ;
rdfs:label "Instelling"@nl ,
"Institution"@en ,
"Instituzione"@it ;
ontology:hasSemanticArea ontology:general .
### https://w3id.org/examode/ontology/Adenoma
ontology:Adenoma rdf:type owl:Class ;
rdfs:subClassOf ontology:ColonPolyp ;
terms:conformsTo ;
oboInOwl:hasExactSynonym "colonic adenomatous polyp; adenomatous polyp of colon; colon adenomatous polyp; adenomatous polyp of the colon; Adenomatous polyp"@en ;
rdfs:comment "A polypoid adenoma that arises from and protrudes into the lumen of the colon. Epithelial dysplasia is always present. According to the architectural pattern it is classified as tubular, tubulovillous, or villous. [Definition Source: NCI]"@en ;
rdfs:isDefinedBy obo:MONDO_0006498 ;
rdfs:label "Adenoma"@en ,
"Adenoma"@it ,
"Adenoom"@nl ;
ontology:associatedDisease obo:MONDO_0002032 ;
ontology:hasSNOMEDCode "M814000" ;
ontology:hasSemanticArea obo:NCIT_C15220 .
### https://w3id.org/examode/ontology/AnatomicalEntity
ontology:AnatomicalEntity rdf:type owl:Class ;
terms:conformsTo "http://linkedlifedata.com/resource/umls/id/C1515976"@en ;
rdfs:comment "Biological entity that is either an individual member of a biological species or constitutes the structural organization of an individual member of a biological species. [ Definition Source: FMA : 62955 http://orcid.org/0000-0001-9114-8737 ]"@en ;
rdfs:isDefinedBy ,
obo:UBERON_0001062 ;
rdfs:label "Anatomical Entity"@en ,
"Anatomische Entiteit"@nl ,
"Entità Anatomica"@it ;
ontology:hasSemanticArea obo:NCIT_C13717 .
### https://w3id.org/examode/ontology/Annotation
ontology:Annotation rdf:type owl:Class ;
rdfs:comment "A general class to represent all the kionds of annnotations that may be needed in an ExaMode report." ;
rdfs:label "Annotatie"@nl ,
"Annotation"@en ,
"Annotazione"@it ;
ontology:hasSemanticArea ontology:general .
### https://w3id.org/examode/ontology/BooleanCheckElement
ontology:BooleanCheckElement rdf:type owl:Class ;
rdfs:subClassOf ontology:CheckElement ;
rdfs:comment "A set of checks controlled on an Immunohistochemical test that can only have a boolean result (positive - negative)." ;
rdfs:label "Booleaans Controle-Element"@nl ,
"Boolean Check Element"@en ,
"Elemento di Controllo Booleano"@it ;
ontology:hasSemanticArea ontology:test .
### https://w3id.org/examode/ontology/CD10
ontology:CD10 rdf:type owl:Class ;
rdfs:subClassOf ontology:BooleanCheckElement ;
terms:conformsTo ;
rdfs:comment "Thermolysin-like specificity, but is almost confined on acting on polypeptides of up to 30 amino acids (PubMed:15283675, PubMed:8168535). Biologically important in the destruction of opioid peptides such as Met- and Leu-enkephalins by cleavage of a Gly-Phe bond (PubMed:17101991). Able to cleave angiotensin-1, angiotensin-2 and angiotensin 1-9 (PubMed:15283675). Involved in the degradation of atrial natriuretic factor (ANF) (PubMed:2531377, PubMed:2972276). Displays UV-inducible elastase activity toward skin preelastic and elastic fibers (PubMed:20876573). [Definition Source: UniProt]"@en ;
rdfs:isDefinedBy ;
rdfs:label "Neprilysin"@en ;
ontology:associatedDisease obo:MONDO_0008903 ;
ontology:associatedKeywordInDiagnosis "CD10" ,
"Neprilysin" ;
ontology:hasSemanticArea ontology:test .
### https://w3id.org/examode/ontology/CD3
ontology:CD3 rdf:type owl:Class ;
rdfs:subClassOf ontology:BooleanCheckElement ;
terms:conformsTo ;
rdfs:comment "Consisting of cell surface type I membrane Delta, Epsilon, Gamma, Zeta, and Eta protein subunits with ITAM domains and noncovalently associated with the disulfide bound heterodimeric alpha/beta and gamma/delta TCR, the CD3 complex couples receptor antigen recognition to signal transduction pathways during T-cell activation. During TCR engagement with MHC-associated antigen on host cell surfaces and synapse formation, CD3 activity leads to Tyr-phosphorylated CD3 subunits, Tyr phosphorylation of LAT colocalized in lipid rafts, and MAPK activation. CD3 signal transduction appears to involve LCK, ZAP70, Nck, SLA, SLA2, and DOCK2. CD3 subunits may also associate with the cytoskeleton. CD3 also mediates TCR signal transduction during the developmental transition through positive selection of immature thymocytes to mature CD4+ or CD8+ T cells. (NCI) [Definition Source: NCI]"@en ;
rdfs:isDefinedBy obo:NCIT_C38897 ;
rdfs:label "Cluster of Differentation 3"@en ;
ontology:associatedDisease obo:MONDO_0005130 ;
ontology:associatedKeywordInDiagnosis "Presence of the word \"CD3\""@en ;
ontology:hasSemanticArea ontology:test .
### https://w3id.org/examode/ontology/CD45
ontology:CD45 rdf:type owl:Class ;
rdfs:subClassOf ontology:BooleanCheckElement ;
terms:conformsTo ;
rdfs:comment """Protein tyrosine-protein phosphatase required for T-cell activation through the antigen receptor. Acts as a positive regulator of T-cell coactivation upon binding to DPP4. The first PTPase domain has enzymatic activity, while the second one seems to affect the substrate specificity of the first one. Upon T-cell activation, recruits and dephosphorylates SKAP1 and FYN. Dephosphorylates LYN, and thereby modulates LYN activity (By similarity).
(Microbial infection) Acts as a receptor for human cytomegalovirus protein UL11 and mediates binding of UL11 to T-cells, leading to reduced induction of tyrosine phosphorylation of multiple signaling proteins upon T-cell receptor stimulation and impaired T-cell proliferation. [Definition Source: Uniprot]"""@en ;
rdfs:isDefinedBy ;
rdfs:label "Fosfatasi tirosina-proteina tipo recettore C"@it ,
"Receptor-type tyrosine-eiwitfosfatase C."@nl ,
"Receptor-type tyrosine-protein phosphatase C"@en ;
ontology:associatedDisease obo:MONDO_0008903 ;
ontology:associatedKeywordInDiagnosis "CD45" ;
ontology:hasSemanticArea ontology:test .
### https://w3id.org/examode/ontology/CK19
ontology:CK19 rdf:type owl:Class ;
rdfs:subClassOf ontology:BooleanCheckElement ;
terms:conformsTo ;
rdfs:comment "Involved in the organization of myofibers. Together with KRT8, helps to link the contractile apparatus to dystrophin at the costameres of striated muscle. [Definition Source: UniProt]"@en ;
rdfs:isDefinedBy ;
rdfs:label "Keratin, type I cytoskeletal 19"@en ;
ontology:associatedDisease obo:MONDO_0008903 ;
ontology:associatedKeywordInDiagnosis "CK19" ;
ontology:hasSemanticArea ontology:test .
### https://w3id.org/examode/ontology/CK20
ontology:CK20 rdf:type owl:Class ;
rdfs:subClassOf ontology:BooleanCheckElement ;
terms:conformsTo ;
rdfs:comment "Plays a significant role in maintaining keratin filament organization in intestinal epithelia. When phosphorylated, plays a role in the secretion of mucin in the small intestine. [Definition Source: UniProt]"@en ;
rdfs:isDefinedBy ;
rdfs:label "Keratin, type I cytoskeletal 20"@en ;
ontology:associatedDisease obo:MONDO_0008903 ;
ontology:associatedKeywordInDiagnosis "CK20" ;
ontology:hasSemanticArea ontology:test .
### https://w3id.org/examode/ontology/CK34BE12
ontology:CK34BE12 rdf:type owl:Class ;
rdfs:subClassOf ontology:BooleanCheckElement ;
terms:conformsTo ;
rdfs:comment "One of the tests that can be made for the lung cancer."@en ;
rdfs:label "Cytokeratin 34bE12"@en ;
ontology:associatedDisease obo:MONDO_0008903 ;
ontology:associatedKeywordInDiagnosis "CK34BE12" ;
ontology:hasSemanticArea ontology:test .
### https://w3id.org/examode/ontology/CK56
ontology:CK56 rdf:type owl:Class ;
rdfs:subClassOf ontology:BooleanCheckElement ;
obo:NCIT_P106 "Laboratory Procedure" ;
terms:conformsTo ;
oboInOwl:hasExactSynonym "Cytokeratin 5/6 Expression; CK 5/6 Immunohistochemical Expression; CK 5/6 Expression; CK5/6; Cytokeratin 5/6 Immunohistochemical Expression" ;
rdfs:comment "An immunohistochemical diagnostic test utilizing an antibody to detect both cytokeratin 5 and 6 in tissues. [Definition Source: NCIT]"@en ;
rdfs:isDefinedBy obo:NCIT_C80497 ;
rdfs:label "Cytokeratin 5/6"@en ;
ontology:associatedDisease obo:MONDO_0008903 ;
ontology:associatedKeywordInDiagnosis "CK5/6" ;
ontology:hasSemanticArea ontology:test .
### https://w3id.org/examode/ontology/CK59
ontology:CK59 rdf:type owl:Class ;
rdfs:subClassOf ontology:BooleanCheckElement ;
terms:conformsTo ;
rdfs:comment "In the hair cortex, hair keratin intermediate filaments are embedded in an interfilamentous matrix, consisting of hair keratin-associated protein (KRTAP), which are essential for the formation of a rigid and resistant hair shaft through their extensive disulfide bond cross-linking with abundant cysteine residues of hair keratins. The matrix proteins include the high-sulfur and high-glycine-tyrosine keratins. [Definition Source: UniProt]"@en ;
rdfs:isDefinedBy ;
rdfs:label "Keratin-associated protein 5-9"@en ;
ontology:associatedDisease obo:MONDO_0008903 ;
ontology:associatedKeywordInDiagnosis "CK5" ;
ontology:hasSemanticArea ontology:test .
### https://w3id.org/examode/ontology/CK7
ontology:CK7 rdf:type owl:Class ;
rdfs:subClassOf ontology:BooleanCheckElement ;
terms:conformsTo ;
rdfs:comment "Blocks interferon-dependent interphase and stimulates DNA synthesis in cells. Involved in the translational regulation of the human papillomavirus type 16 E7 mRNA (HPV16 E7). [Definition Source: UniProt]"@en ;
rdfs:isDefinedBy ;
rdfs:label "Keratin, type II cytoskeletal 7"@en ;
ontology:associatedDisease obo:MONDO_0008903 ;
ontology:associatedKeywordInDiagnosis "CK7" ;
ontology:hasSemanticArea ontology:test .
### https://w3id.org/examode/ontology/CMGA
ontology:CMGA rdf:type owl:Class ;
rdfs:subClassOf ontology:BooleanCheckElement ;
terms:conformsTo ;
rdfs:comment """Pancreastatin:
Strongly inhibits glucose induced insulin release from the pancreas.
Catestatin:
Inhibits catecholamine release from chromaffin cells and noradrenergic neurons by acting as a non-competitive nicotinic cholinergic antagonist (PubMed:15326220). Displays antibacterial activity against Gram-positive bacteria S.aureus and M.luteus, and Gram-negative bacteria E.coli and P.aeruginosa (PubMed:15723172 and PubMed:24723458). Can induce mast cell migration, degranulation and production of cytokines and chemokines (PubMed:21214543). Acts as a potent scavenger of free radicals in vitro (PubMed:24723458). May play a role in the regulation of cardiac function and blood pressure (PubMed:18541522).
Serpinin:
Regulates granule biogenesis in endocrine cells by up-regulating the transcription of protease nexin 1 (SERPINE2) via a cAMP-PKA-SP1 pathway. This leads to inhibition of granule protein degradation in the Golgi complex which in turn promotes granule formation.
Miscellaneous
Binds calcium with a low-affinity.
[Definition Source: UniProt]"""@en ;
rdfs:isDefinedBy ;
rdfs:label "Chromogranin-A"@en ;
ontology:associatedDisease obo:MONDO_0008903 ;
ontology:associatedKeywordInDiagnosis "Chromogranina"@it ;
ontology:hasSemanticArea ontology:test .
### https://w3id.org/examode/ontology/CeliacAnatomicalEntity
ontology:CeliacAnatomicalEntity rdf:type owl:Class ;
rdfs:subClassOf ontology:AnatomicalEntity ;
owl:disjointWith ontology:CervixAnatomicalEntity ,
ontology:ColonAnatomicalEntity ,
ontology:LungAnatomicalEntity ;
rdfs:comment "Class describing biological entities related to celiac disease."@en ;
rdfs:label "Celiac Anatomical Entity"@en ,
"Coeliakie Anatomische Entiteit"@nl ,
"Entità Anatomica relativa alla Celiachia"@it ;
ontology:hasSemanticArea obo:NCIT_C13717 .
### https://w3id.org/examode/ontology/CeliacClinicalCaseReport
ontology:CeliacClinicalCaseReport rdf:type owl:Class ;
owl:equivalentClass [ rdf:type owl:Restriction ;
owl:onProperty ontology:presenceOf ;
owl:someValuesFrom ontology:CeliacDiseaseFinding
] ,
[ rdf:type owl:Restriction ;
owl:onProperty ontology:hasOutcome ;
owl:allValuesFrom ontology:CeliacOutcome
] ;
rdfs:subClassOf ontology:ClinicalCaseReport ;
owl:disjointWith ontology:CervixClinicalCaseReport ,
ontology:ColonClinicalCaseReport ,
ontology:LungClinicalCaseReport ;
rdfs:comment "Class representing all the celiac disease clinical cases."@en ;
rdfs:label "Caso Clinico di Malattia Celiaca"@it ,
"Celiac Clinical Case Report"@en ,
"Klinisch Geval van Coeliakie"@nl ;
ontology:hasSemanticArea ontology:general .
### https://w3id.org/examode/ontology/CeliacDiseaseFinding
ontology:CeliacDiseaseFinding rdf:type owl:Class ;
rdfs:subClassOf ontology:Finding ;
owl:disjointWith ontology:Dysplasia ,
ontology:HPVInfection ,
ontology:IntestinalAbnormality ,
ontology:Koilocyte ,
ontology:LungCarcinomaFinding ;
rdfs:comment "Finding in celiac outcomes."@en ;
rdfs:label "Celiac Disease Finding"@en ,
"Coeliakie Vinden"@nl ,
"Scoperta riguardo la Malattia Celiaca"@it ;
ontology:associatedDisease obo:MONDO_0005130 ;
ontology:hasSemanticArea obo:NCIT_C15220 .
### https://w3id.org/examode/ontology/CeliacIntervention
ontology:CeliacIntervention rdf:type owl:Class ;
owl:equivalentClass [ rdf:type owl:Restriction ;
owl:onProperty ontology:hasLocation ;
owl:allValuesFrom ontology:CeliacAnatomicalEntity
] ;
rdfs:subClassOf ontology:Intervention ;
owl:disjointWith ontology:CervixIntervention ,
ontology:ColonIntervention ,
ontology:LungIntervention ;
rdfs:comment "Class describing interventions or procedures related to celiac disease."@en ;
rdfs:label "Celiac Disease Intervention or Procedure"@en ,
"Coeliakie Tussenkomst of Procedure"@nl ,
"Intervento o Procedura relativa allla Malattia Celiaca"@it ;
ontology:hasSemanticArea ontology:procedure .
### https://w3id.org/examode/ontology/CeliacInterventionType
ontology:CeliacInterventionType rdf:type owl:Class ;
rdfs:subClassOf ontology:InterventionType ;
rdfs:comment "Class describing the type of intervention or procedure related to celiac disease."@en ;
rdfs:label "Celiac Disease Intervention or Procedure Type"@en ,
"Tipo di Intervento o Procedura relativa allla Malattia Celiaca"@it ,
"Type Coeliakie Tussenkomst of Procedure"@nl ;
ontology:hasSemanticArea ontology:procedure .
### https://w3id.org/examode/ontology/CeliacOutcome
ontology:CeliacOutcome rdf:type owl:Class ;
owl:equivalentClass [ rdf:type owl:Restriction ;
owl:onProperty ontology:hasIntervention ;
owl:allValuesFrom ontology:CeliacIntervention
] ,
[ rdf:type owl:Restriction ;
owl:onProperty ontology:hasLocation ;
owl:allValuesFrom ontology:CeliacAnatomicalEntity
] ;
rdfs:subClassOf ontology:Outcome ;
owl:disjointWith ontology:CervixOutcome ,
ontology:ColonOutcome ,
ontology:LungOutcome ;
rdfs:comment "Class representing all outcomes of celiac clinical case report."@en ;
rdfs:label "Celiac Outcome"@en ,
"Resultaat van Coeliakie"@nl ,
"Risultato di Malattia Celiaca"@it ;
ontology:hasSemanticArea obo:NCIT_C15220 .
### https://w3id.org/examode/ontology/CeliacPOType
ontology:CeliacPOType rdf:type owl:Class ;
rdfs:subClassOf ontology:PositiveResultType ;
owl:disjointWith ontology:CervixPOType ,
ontology:ColonPOType ,
ontology:LungPOType ;
rdfs:comment "Class describing for which type of celiac disease the clinical case tested positive."@en ;
rdfs:label "Celiac Positive Outcome Type"@en ,
"Tipo di Risultato Positivo alla Malattia Celiaca"@it ,
"Type Coeliakie Positief Resultaat"@nl ;
ontology:hasSemanticArea obo:NCIT_C15220 .
### https://w3id.org/examode/ontology/CeliacPositiveOutcome
ontology:CeliacPositiveOutcome rdf:type owl:Class ;
owl:equivalentClass [ rdf:type owl:Restriction ;
owl:onProperty ontology:positiveType ;
owl:allValuesFrom ontology:CeliacPOType
] ;
rdfs:subClassOf ontology:CeliacOutcome ,
ontology:PositiveOutcome ;
owl:disjointWith ontology:CervixPositiveOutcome ,
ontology:ColonPositiveOutcome ,
ontology:LungPositiveOutcome ;
rdfs:comment "Positive Outcome, i.e., something related to celiac disease has been found in the patient."@en ;
rdfs:label "Celiac Positive Outcome"@en ,
"Positieve Uitkomst van Coeliakie"@nl ,
"Risultato Positivo di Malattia Celiaca"@it ;
ontology:hasSemanticArea obo:NCIT_C15220 .
### https://w3id.org/examode/ontology/CeliacSurgery
ontology:CeliacSurgery rdf:type owl:Class ;
rdfs:subClassOf ontology:CeliacIntervention ,
ontology:SurgicalProcedure ;
owl:disjointWith ontology:CervixSurgery ,
ontology:ColonSurgery ,
ontology:LungSurgery ;
rdfs:comment "Class describing surgical procedures related to celiac disease."@en ;
rdfs:label "Celiac Disease Surgical Procedure"@en ,
"Coeliakie Chirurgische Ingreep"@nl ,
"Intervento Chirurgico relativo allla Malattia Celiaca"@it ;
ontology:hasSemanticArea ontology:procedure .
### https://w3id.org/examode/ontology/CeliacSurgeryType
ontology:CeliacSurgeryType rdf:type owl:Class ;
rdfs:subClassOf ontology:SurgeryType ;
rdfs:comment "Class describing surgical procedure type related to celiac disease."@en ;
rdfs:label "Celiac Disease Surgery Type"@en ,
"Tipo di Intervento Chirurgico relativo alla Malattia Celiaca"@it ,
"Type Coeliakie Chirurgische Ingreep"@nl ;
ontology:hasSemanticArea ontology:procedure .
### https://w3id.org/examode/ontology/CervixAnatomicalEntity
ontology:CervixAnatomicalEntity rdf:type owl:Class ;
rdfs:subClassOf ontology:AnatomicalEntity ;
owl:disjointWith ontology:ColonAnatomicalEntity ,
ontology:LungAnatomicalEntity ;
rdfs:comment "Class describing biological entities related to cervix cancer."@en ;
rdfs:label "Baarmoederhals Anatomische Entiteit"@nl ,
"Cervix Anatomical Entity"@en ,
"Entità Anatomica relativa al Tumore alla Cervice"@it ;
ontology:hasSemanticArea obo:NCIT_C13717 .
### https://w3id.org/examode/ontology/CervixClinicalCaseReport
ontology:CervixClinicalCaseReport rdf:type owl:Class ;
owl:equivalentClass [ rdf:type owl:Restriction ;
owl:onProperty ontology:hasOutcome ;
owl:allValuesFrom ontology:CervixOutcome
] ;
rdfs:subClassOf ontology:ClinicalCaseReport ;
owl:disjointWith ontology:ColonClinicalCaseReport ,
ontology:LungClinicalCaseReport ;
rdfs:comment "Class representing the clinical cases about cervix cancer."@en ;
rdfs:label "Caso Clinico di Cancro alla Cervice"@it ,
"Cervix Clinical Case Report"@en ,
"Klinisch Geval van Baarmoederhalskanker"@nl ;
ontology:hasSemanticArea ontology:general .
### https://w3id.org/examode/ontology/CervixIntervention
ontology:CervixIntervention rdf:type owl:Class ;
owl:equivalentClass [ rdf:type owl:Restriction ;
owl:onProperty ontology:hasLocation ;
owl:allValuesFrom ontology:CervixAnatomicalEntity
] ;
rdfs:subClassOf ontology:Intervention ;
owl:disjointWith ontology:ColonIntervention ,
ontology:LungIntervention ;
rdfs:comment "Class describing interventions or procedures related to cervix cancer."@en ;
rdfs:label "Baarmoederhalskanker Tussenkomst of Procedure"@nl ,
"Cervix Cancer Intervention or Procedure"@en ,
"Intervento o Procedura relativa al Cancro alla Cervice"@it ;
ontology:hasSemanticArea ontology:procedure .
### https://w3id.org/examode/ontology/CervixInterventionType
ontology:CervixInterventionType rdf:type owl:Class ;
rdfs:subClassOf ontology:InterventionType ;
rdfs:comment "Class describing the type of intervention or procedure related to cervix cancer."@en ;
rdfs:label "Cervix Intervention or Procedure Type"@en ,
"Tipo di Intervento o Procedura relativa al Cancro alla Cervice"@it ,
"Type Baarmoederhalskanker Tussenkomst of Procedure"@nl ;
ontology:hasSemanticArea ontology:procedure .
### https://w3id.org/examode/ontology/CervixOutcome
ontology:CervixOutcome rdf:type owl:Class ;
owl:equivalentClass [ rdf:type owl:Restriction ;
owl:onProperty ontology:hasIntervention ;
owl:allValuesFrom ontology:CervixIntervention
] ,
[ rdf:type owl:Restriction ;
owl:onProperty ontology:hasLocation ;
owl:allValuesFrom ontology:CervixAnatomicalEntity
] ,
[ rdf:type owl:Restriction ;
owl:onProperty ontology:detectedHPV ;
owl:minQualifiedCardinality "0"^^xsd:nonNegativeInteger ;
owl:onClass ontology:HPVInfection
] ,
[ rdf:type owl:Restriction ;
owl:onProperty ontology:detectedKoilocyte ;
owl:minQualifiedCardinality "0"^^xsd:nonNegativeInteger ;
owl:onClass ontology:Koilocyte
] ,
[ rdf:type owl:Restriction ;
owl:onProperty ontology:detectedHPV ;
owl:maxQualifiedCardinality "1"^^xsd:nonNegativeInteger ;
owl:onClass ontology:HPVInfection
] ,
[ rdf:type owl:Restriction ;
owl:onProperty ontology:detectedKoilocyte ;
owl:maxQualifiedCardinality "1"^^xsd:nonNegativeInteger ;
owl:onClass ontology:Koilocyte
] ;
rdfs:subClassOf ontology:Outcome ;
owl:disjointWith ontology:ColonOutcome ,
ontology:LungOutcome ;
rdfs:comment "Class representing all outcomes of cervix clinical case reports."@en ;
rdfs:label "Cervix Outcome"@en ,
"Resultaat van Baarmoederhalskanker"@nl ,
"Risultato di Cancro alla Cervice"@it ;
ontology:hasSemanticArea obo:NCIT_C15220 .
### https://w3id.org/examode/ontology/CervixPOType
ontology:CervixPOType rdf:type owl:Class ;
rdfs:subClassOf ontology:PositiveResultType ;
owl:disjointWith ontology:ColonPOType ,
ontology:LungPOType ;
rdfs:comment "Class describing for which type of cervix cancer the clinical case tested positive."@en ;
rdfs:label "Cervix Positive Outcome Type"@en ,
"Tipo di Risultato Positivo al Cancro alla Cervice"@it ,
"Type Baarmoederhalskanker Positief Resultaat"@nl ;
ontology:hasSemanticArea obo:NCIT_C15220 .
### https://w3id.org/examode/ontology/CervixPositiveOutcome
ontology:CervixPositiveOutcome rdf:type owl:Class ;
owl:equivalentClass [ rdf:type owl:Restriction ;
owl:onProperty ontology:positiveType ;
owl:allValuesFrom ontology:CervixPOType
] ;
rdfs:subClassOf ontology:CervixOutcome ,
ontology:PositiveOutcome ;
owl:disjointWith ontology:ColonPositiveOutcome ,
ontology:LungPositiveOutcome ;
rdfs:comment "Positive Outcome, i.e., something related to cervix cancer has been found in the patient."@en ;
rdfs:label "Cervix Positive Outcome"@en ,
"Positieve Uitkomst van Baarmoederhalskanker"@nl ,
"Risulato Positivo di Cancro alla Cervice"@it ;
ontology:hasSemanticArea obo:NCIT_C15220 .
### https://w3id.org/examode/ontology/CervixSurgery
ontology:CervixSurgery rdf:type owl:Class ;
rdfs:subClassOf ontology:CervixIntervention ,
ontology:SurgicalProcedure ;
owl:disjointWith ontology:ColonSurgery ,
ontology:LungSurgery ;
rdfs:comment "Class describing surgical procedures related to cervix cancer."@en ;
rdfs:label "Baarmoederhalskanker Chirurgische Ingreep"@nl ,
"Cervix Cancer Surgical Procedure"@en ,
"Intervento Chirurgico relativo al Cancro alla Cervice"@it ;
ontology:hasSemanticArea ontology:procedure .
### https://w3id.org/examode/ontology/CervixSurgeryType
ontology:CervixSurgeryType rdf:type owl:Class ;
rdfs:subClassOf ontology:CervixInterventionType ,
ontology:SurgeryType ;
rdfs:comment "Class describing surgical procedure type related to cervix cancer."@en ;
rdfs:label "Cervix Surgery Type"@en ,
"Tipo di Intervento Chirurgico relativo al Tumore alla Cervice"@it ,
"Type Baarmoederhalskanker Chirurgische Ingreep"@nl ;
ontology:hasSemanticArea ontology:procedure .
### https://w3id.org/examode/ontology/CheckElement
ontology:CheckElement rdf:type owl:Class ;
rdfs:subClassOf ontology:ImmunohistochemicalTest ;
rdfs:comment "This is a set of elements containing all the possible checks that a patient may do for a generic disease." ;
rdfs:label "Check Element"@en ,
"Controleer Element"@nl ,
"Controllo"@it ;
ontology:hasSemanticArea ontology:test .
### https://w3id.org/examode/ontology/ClearCellAdenocarcinoma
ontology:ClearCellAdenocarcinoma rdf:type owl:Class ;
rdfs:subClassOf ontology:LungAdenocarcinoma ;
terms:conformsTo ;
rdfs:comment "A malignant neoplasm composed of glandular epithelial clear cells. Various architectural patterns may be seen, including papillary, tubulocystic, and solid. [Definition Source: NCI]"@en ;
rdfs:isDefinedBy obo:MONDO_0005004 ;
rdfs:label "Adenocarcinoma a Cellule Chiare"@it ,
"Clear Cell Adenocarcinoma"@en ,
"Heldercellig Adenocarcinoom"@nl ;
ontology:associatedDisease obo:MONDO_0008903 ;
ontology:definition "MSH: An adenocarcinoma characterized by the presence of varying combinations of clear and hobnail-shaped tumor cells. There are three predominant patterns described as tubulocystic, solid, and papillary. These tumors, usually located in the female reproductive organs, have been seen more frequently in young women since 1970 as a result of the association with intrauterine exposure to diethylstilbestrol. (From Holland et al., Cancer Medicine, 3d ed),NCI: A rare type of tumor, usually of the female genital tract, in which the insides of the cells look clear when viewed under a microscope.,NCI: A malignant neoplasm comprising glandular epithelial clear cells.,NCI: A malignant neoplasm composed of glandular epithelial clear cells. Various architectural patterns may be seen, including papillary, tubulocystic, and solid."@en ;
ontology:hasSNOMEDCode "M831030" ;
ontology:hasSemanticArea obo:NCIT_C15220 .
### https://w3id.org/examode/ontology/ClinicalCaseReport
ontology:ClinicalCaseReport rdf:type owl:Class ;
owl:equivalentClass [ rdf:type owl:Restriction ;
owl:onProperty ontology:isAboutDisease ;
owl:qualifiedCardinality "1"^^xsd:nonNegativeInteger ;
owl:onClass ontology:Disease
] ;
rdfs:comment "This is the main class of the ontology. The Clinical Case is one record in the database, and in this version of the ontology may be of one of four diseases: celiac disease, lung cancer, cervix cancer, colon cancer. This class is sub-instantiated to the other different sub-classes"@en ;
rdfs:label "Caso clinico"@it ,
"Clinical Case Report"@en ,
"Klinisch Casusrapport"@nl ;
ontology:hasSemanticArea ontology:general .
### https://w3id.org/examode/ontology/ColonAnatomicalEntity
ontology:ColonAnatomicalEntity rdf:type owl:Class ;
rdfs:subClassOf ontology:AnatomicalEntity ;
owl:disjointWith ontology:LungAnatomicalEntity ;
rdfs:comment "Class describing biological entities related to colon cancer."@en ;
rdfs:label "Colon Anatomical Entity"@en ,
"Dikke Darm Anatomische Entiteit"@nl ,
"Entità Anatomica relativa al Tumore al Colon"@it ;
ontology:hasSemanticArea obo:NCIT_C13717 .
### https://w3id.org/examode/ontology/ColonClinicalCaseReport
ontology:ColonClinicalCaseReport rdf:type owl:Class ;
owl:equivalentClass [ rdf:type owl:Restriction ;
owl:onProperty ontology:hasOutcome ;
owl:allValuesFrom ontology:ColonOutcome
] ;
rdfs:subClassOf ontology:ClinicalCaseReport ;
owl:disjointWith ontology:LungClinicalCaseReport ;
rdfs:comment "Class representing all colon cancer cases."@en ;
rdfs:label "Caso Clinico di Cancro al Colon"@it ,
"Colon Clinical Case Report"@en ,
"Klinisch Geval van Darmkanker"@nl ;
ontology:hasSemanticArea ontology:general .
### https://w3id.org/examode/ontology/ColonHyperplasticPolyp
ontology:ColonHyperplasticPolyp rdf:type owl:Class ;
rdfs:subClassOf ontology:ColonPolyp ;
obo:NCIT_P106 "Disease or Syndrome" ;
terms:conformsTo ;
oboInOwl:hasExactSynonym "Hyperplastic Colonic Polyp; Colon HP; Metaplastic Polyp of the Colon; Metaplastic Polyp of Colon; Metaplastic Colonic Polyp; Hyperplastic Polyp of the Colon; Metaplastic Colon Polyp; Hyperplastic Polyp of Colon; Colon Metaplastic Polyp; Colon MP; Colon Hyperplastic Polyp; Colonic Hyperplastic Polyp" ;
rdfs:comment "A serrated polypoid lesion that arises in the colon. It is usually found in the distant colon and it rarely produces symptoms. This group includes goblet cell rich, mucin poor, and microvesicular hyperplastic polyps. [Definition Source: NCI]"@en ;
rdfs:isDefinedBy obo:NCIT_C4930 ;
rdfs:label "Colon Hyperplastic Polyp"@en ,
"Colon Hyperplastic Polyp"@nl ,
"Polipo Iperplastico del Colon"@it ;
ontology:associatedDisease obo:MONDO_0002032 ;
ontology:hasSNOMEDCode "M720400" ;
ontology:hasSemanticArea obo:NCIT_C15220 ;
ontology:internalNotes "old SNOMED M72040" .
### https://w3id.org/examode/ontology/ColonInflammatoryPolyp
ontology:ColonInflammatoryPolyp rdf:type owl:Class ;
rdfs:subClassOf ontology:ColonPolyp ;
terms:conformsTo ;
oboInOwl:hasExactSynonym "inflammatory polyp of colon; inflammatory polyp of the colon; colonic inflammatory polyp."@en ;
rdfs:comment "A non-neoplastic polypoid lesion in the colon. It may arise in a background of inflammatory bowel disease or colitis. It is characterized by the presence of a distorted epithelium, inflammation, and fibrosis. [Definition Source: NCI]"@en ;
rdfs:isDefinedBy obo:MONDO_0006152 ;
rdfs:label "Colon Inflammatory Polyp"@en ,
"Colon Ontstekingspoliep"@nl ,
"Polipo Infiammatorio del Colon"@it ;
ontology:associatedDisease obo:MONDO_0002032 ;
ontology:hasSemanticArea obo:NCIT_C15220 .
### https://w3id.org/examode/ontology/ColonIntervention
ontology:ColonIntervention rdf:type owl:Class ;
owl:equivalentClass [ rdf:type owl:Restriction ;
owl:onProperty ontology:hasLocation ;
owl:allValuesFrom ontology:ColonAnatomicalEntity
] ;
rdfs:subClassOf ontology:Intervention ;
owl:disjointWith ontology:LungIntervention ;
rdfs:comment "Class describing interventions or procedures related to colon cancer."@en ;
rdfs:label "Colon Cancer Intervention or Procedure"@en ,
"Darmkanker Tussenkomst of Procedure"@nl ,
"Intervento o Procedura relativa al Cancro al Colon"@it ;
ontology:hasSemanticArea ontology:procedure .
### https://w3id.org/examode/ontology/ColonInterventionType
ontology:ColonInterventionType rdf:type owl:Class ;
rdfs:subClassOf ontology:InterventionType ;
rdfs:comment "Class describing the type of intervention or procedure related to colon cancer."@en ;
rdfs:label "Colon Intervention or Procedure Type"@en ,
"Tipo di Intervento o Procedura relativa al Cancro al Colon"@it ,
"Type Darmkanker Tussenkomst of Procedure"@nl ;
ontology:hasSemanticArea ontology:procedure .
### https://w3id.org/examode/ontology/ColonOutcome
ontology:ColonOutcome rdf:type owl:Class ;
owl:equivalentClass [ rdf:type owl:Restriction ;
owl:onProperty ontology:hasIntervention ;
owl:allValuesFrom ontology:ColonIntervention
] ,
[ rdf:type owl:Restriction ;
owl:onProperty ontology:hasLocation ;
owl:allValuesFrom ontology:ColonAnatomicalEntity
] ;
rdfs:subClassOf ontology:Outcome ;
owl:disjointWith ontology:LungOutcome ;
rdfs:comment "Class representing all outcomes of colon clinical case reports."@en ;
rdfs:label "Colon Outcome"@en ,
"Resultaat van Darmkanker"@nl ,
"Risultato di Cancro al Colon"@it ;
ontology:hasSemanticArea obo:NCIT_C15220 .
### https://w3id.org/examode/ontology/ColonPOType
ontology:ColonPOType rdf:type owl:Class ;
rdfs:subClassOf ontology:PositiveResultType ;
owl:disjointWith ontology:LungPOType ;
rdfs:comment "Class describing for which type of colon cancer the clinical case tested positive."@en ;
rdfs:label "Colon Positive Outcome Type"@en ,
"Tipo di Risultato Positivo al Cancro al Colon"@it ,
"Type Darmkanker Positief Resultaat"@nl ;
ontology:hasSemanticArea obo:NCIT_C15220 .
### https://w3id.org/examode/ontology/ColonPolyp
ontology:ColonPolyp rdf:type owl:Class ;
owl:equivalentClass [ rdf:type owl:Restriction ;
owl:onProperty ontology:hasDysplasia ;
owl:minQualifiedCardinality "0"^^xsd:nonNegativeInteger ;
owl:onClass ontology:Dysplasia
] ,
[ rdf:type owl:Restriction ;
owl:onProperty ontology:hasDysplasia ;
owl:maxQualifiedCardinality "1"^^xsd:nonNegativeInteger ;
owl:onClass ontology:Dysplasia
] ;
rdfs:subClassOf ontology:ColonPositiveOutcome ;
terms:conformsTo ;
oboInOwl:hasExactSynonym "colon polyp; polyp of the colon; colonic polyp"@en ;
rdfs:comment "A polyp that involves the colon. [Definition Source: MONDO]"@en ;
rdfs:isDefinedBy obo:MONDO_0021400 ;
rdfs:label "Poliep van de Dikke Darm"@nl ,
"Polipo del Colon"@it ,
"Polyp of Colon"@en ;
ontology:associatedDisease obo:MONDO_0002032 ;
ontology:hasSemanticArea obo:NCIT_C15220 .
### https://w3id.org/examode/ontology/ColonPositiveOutcome
ontology:ColonPositiveOutcome rdf:type owl:Class ;
owl:equivalentClass [ rdf:type owl:Restriction ;
owl:onProperty ontology:positiveType ;
owl:allValuesFrom ontology:ColonPOType
] ;
rdfs:subClassOf ontology:ColonOutcome ,
ontology:PositiveOutcome ;
owl:disjointWith ontology:LungPositiveOutcome ;
rdfs:comment "Positive Outcome, i.e., something related to colon cancer has been found in the patient."@en ;
rdfs:label "Colon Positive Outcome"@en ,
"Positieve Uitkomst van Darmkanker"@nl ,
"Risulato Positivo di Cancro al Colon"@it ;
ontology:hasSemanticArea obo:NCIT_C15220 .
### https://w3id.org/examode/ontology/ColonSurgery
ontology:ColonSurgery rdf:type owl:Class ;
rdfs:subClassOf ontology:ColonIntervention ,
ontology:SurgicalProcedure ;
owl:disjointWith ontology:LungSurgery ;
rdfs:comment "Class describing surgical procedures related to colon cancer."@en ;
rdfs:label "Colon Cancer Surgical Procedure"@en ,
"Darmkanker Chirurgische Ingreep"@nl ,
"Intervento Chirurgico relativo al Cancro al Colon"@it ;
ontology:hasSemanticArea ontology:procedure .
### https://w3id.org/examode/ontology/ColonSurgeryType
ontology:ColonSurgeryType rdf:type owl:Class ;
rdfs:subClassOf ontology:ColonInterventionType ,
ontology:SurgeryType ;
rdfs:comment "Class describing surgical procedure type related to colon cancer."@en ;
rdfs:label "Colon Surgery Type"@en ,
"Tipo di Intervento Chirurgico relativo al Tumore al Colon"@it ,
"Type Darmkanker Chirurgische Ingreep"@nl ;
ontology:hasSemanticArea ontology:procedure .
### https://w3id.org/examode/ontology/ColonTubularAdenoma
ontology:ColonTubularAdenoma rdf:type owl:Class ;
rdfs:subClassOf ontology:Adenoma ;
terms:conformsTo ;
oboInOwl:hasExactSynonym "Colon Tubular Adenoma" ;
rdfs:comment "A usually polypoid neoplasm that arises from the glandular epithelium of the colonic mucosa. It is characterized by a tubular architectural pattern. The neoplastic glandular cells have dysplastic features. [Definition Source: NCI]"@en ;
rdfs:isDefinedBy obo:NCIT_C7041 ;
rdfs:label "Adenoma Tubulare del Colon"@it ,
"Colon Tubulair Adenoom"@nl ,
"Colon Tubular Adenoma"@en ;
ontology:associatedDisease obo:MONDO_0002032 ;
ontology:hasSNOMEDCode "M821100" ;
ontology:hasSemanticArea obo:NCIT_C15220 .
### https://w3id.org/examode/ontology/ColonTubulovillousAdenoma
ontology:ColonTubulovillousAdenoma rdf:type owl:Class ;
rdfs:subClassOf ontology:Adenoma ;
obo:NCIT_P106 "Gene or Genome" ;
terms:conformsTo ;
oboInOwl:hasExactSynonym "Tubulovillous Adenoma of Colon; Colon Tubulovillous Adenoma; Tubulovillous Adenoma of the Colon; Colonic Tubulovillous Adenoma"@en ;
rdfs:comment "A neoplasm that arises from the glandular epithelium of the colonic mucosa. It is characterized by tubular and villous architectural patterns. The neoplastic glandular cells have dysplastic features. [Definition Source: NCI]"@en ;
rdfs:isDefinedBy obo:NCIT_C5496 ;
rdfs:label "Adenoma Tubulovilloso del Colon"@it ,
"Colon Tubulovillous Adenoma"@en ,
"Colon Tubulovillous Adenoom"@nl ;
ontology:associatedDisease obo:MONDO_0002032 ;
ontology:hasSNOMEDCode "M826300" ;
ontology:hasSemanticArea obo:NCIT_C15220 .
### https://w3id.org/examode/ontology/ColonVillousAdenoma
ontology:ColonVillousAdenoma rdf:type owl:Class ;
rdfs:subClassOf ontology:Adenoma ;
terms:conformsTo ;
oboInOwl:hasExactSynonym "villous adenoma of colon" ;
rdfs:comment "A villous adenoma that involves the colon. [Definition Source: NCI]"@en ;
rdfs:isDefinedBy obo:MONDO_0021271 ;
rdfs:label "Adenoma del Colon Villoso"@it ,
"Colon Villous Adenoma"@en ,
"Colon Villous Adenoom"@nl ;
ontology:associatedDisease obo:MONDO_0002032 ;
ontology:hasSNOMEDCode "M826110" ;
ontology:hasSemanticArea obo:NCIT_C15220 ;
ontology:internalNotes "previous SNOMED code M82611" .
### https://w3id.org/examode/ontology/DSC3
ontology:DSC3 rdf:type owl:Class ;
rdfs:subClassOf ontology:BooleanCheckElement ;
terms:conformsTo ;
rdfs:comment "Component of intercellular desmosome junctions. Involved in the interaction of plaque proteins and intermediate filaments mediating cell-cell adhesion. May contribute to epidermal cell positioning (stratification) by mediating differential adhesiveness between cells that express different isoforms. [Definition Source: UniProt]"@en ;
rdfs:isDefinedBy ;
rdfs:label "Desmocollin-3"@en ;
ontology:associatedDisease obo:MONDO_0008903 ;
ontology:hasSemanticArea ontology:test .
### https://w3id.org/examode/ontology/Disease
ontology:Disease rdf:type owl:Class ;
terms:conformsTo ;
rdfs:comment "A disease is a disposition to undergo pathological processes that exists in an organism because of one or more disorders in that organism. [Definition Source: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3041577/]"@en ;
rdfs:isDefinedBy obo:NCIT_C2991 ;
rdfs:label "Disease or Disorder"@en ,
"Malattia o Disturbo"@it ,
"Ziekte of Aandoening"@nl ;
rdfs:seeAlso ,
obo:DOID_4 ,
obo:MONDO_0000001 ,
;
ontology:hasSemanticArea ontology:general .
### https://w3id.org/examode/ontology/Duodenitis
ontology:Duodenitis rdf:type owl:Class ;
rdfs:subClassOf ontology:CeliacPositiveOutcome ;
terms:conformsTo ;
oboInOwl:hasExactSynonym "duodenitis; duodenum inflammation; inflammation of duodenum" ;
oboInOwl:hasRelatedSynonym "hemorragic duodenitis" ;
rdfs:comment "A form of inflammation"@en ,
"Acute or chronic inflammation of the duodenum. Causes include bacterial and viral infections and gastroesophageal reflux disease. Symptoms include vomiting and abdominal pain. [Definition Source: NCI]"@en ;
rdfs:isDefinedBy obo:MONDO_0004627 ;
rdfs:label "Duodenite"@it ,
"Duodenitis"@en ,
"Duodenitis"@nl ;
rdfs:seeAlso obo:NCIT_C94409 ;
ontology:associatedDisease obo:MONDO_0005130 ;
ontology:hasSNOMEDCode "M400000" ;
ontology:hasSemanticArea obo:NCIT_C15220 .
### https://w3id.org/examode/ontology/Dysplasia
ontology:Dysplasia rdf:type owl:Class ;
rdfs:subClassOf ontology:Finding ;
owl:disjointWith ontology:HPVInfection ,
ontology:IntestinalAbnormality ,
ontology:Koilocyte ,
ontology:LungCarcinomaFinding ;
terms:conformsTo ;
oboInOwl:hasExactSynonym "Dyscrasia; Dysplasia; Dysplastic; dyscrasia; dysplasia"@en ;
rdfs:comment "A usually neoplastic transformation of the cell, associated with altered architectural tissue patterns. The cellular changes include nuclear and cytoplasmic abnormalities. Molecular genetic abnormalities are also often found and, in some instances, may lead to cancer."@en ,
"A usually neoplastic transformation of the cell, associated with altered architectural tissue patterns. The cellular changes include nuclear and cytoplasmic abnormalities. Molecular genetic abnormalities are also often found and, in some instances, may lead to cancer. [Definition Source: NCI]"@en ;
rdfs:isDefinedBy obo:NCIT_C4086 ;
rdfs:label "Displasia"@it ,
"Dysplasia"@en ,
"Dysplasie"@nl ;
ontology:associatedDisease obo:MONDO_0002032 ;
ontology:hasSNOMEDCode "M740000" ;
ontology:hasSemanticArea obo:NCIT_C15220 ;
ontology:internalNotes "original SNOMED M74000" .
### https://w3id.org/examode/ontology/Finding
ontology:Finding rdf:type owl:Class ;
terms:conformsTo ;
rdfs:comment "A meaningful interpretation of data or observations resulting from planned evaluations. Compare to conclusion, hypothesis. See also general observation class, intervention, event. A meaningful interpretation of data or observations resulting from planned evaluations. Compare to conclusion, hypothesis. See also general observation class, intervention, event. [Definition Source: NCI]"@en ;
rdfs:isDefinedBy obo:NCIT_C3367 ;
rdfs:label "Finding"@en ,
"Scoperta"@it ,
"Vinden"@nl ;
ontology:hasSemanticArea obo:NCIT_C15220 .
### https://w3id.org/examode/ontology/FloatCheckElement
ontology:FloatCheckElement rdf:type owl:Class ;
rdfs:subClassOf ontology:CheckElement ;
rdfs:comment "A set of checks that can be performed on a Immunohistochemical Test that present a float as output value." ;
rdfs:label "Elemento di Controllo del Galleggiante"@it ,
"Float Check Element"@en ,
"Voltter Controle-Element"@nl ;
ontology:hasSemanticArea ontology:test .
### https://w3id.org/examode/ontology/Gender
ontology:Gender rdf:type owl:Class ;
terms:conformsTo ;
rdfs:comment "Characteristics of people that are socially constructed, including norms, behaviors, and roles based on sex. As a social construct, gender varies from society to society and can change over time. (Adapted from WHO.) [Definition Source: NCI]"@en ;
rdfs:isDefinedBy obo:NCIT_C17357 ;
rdfs:label "Gender"@en ,
"Genere Biologico"@it ,
"Geslacht"@nl ;
ontology:hasSemanticArea ontology:general .
### https://w3id.org/examode/ontology/HER2
ontology:HER2 rdf:type owl:Class ;
rdfs:subClassOf ontology:StringCheckElement ;
rdfs:comment "Protein tyrosine kinase that is part of several cell surface receptor complexes, but that apparently needs a coreceptor for ligand binding. Essential component of a neuregulin-receptor complex, although neuregulins do not interact with it alone. GP30 is a potential ligand for this receptor. Regulates outgrowth and stabilization of peripheral microtubules (MTs). Upon ERBB2 activation, the MEMO1-RHOA-DIAPH1 signaling pathway elicits the phosphorylation and thus the inhibition of GSK3B at cell membrane. This prevents the phosphorylation of APC and CLASP2, allowing its association with the cell membrane. In turn, membrane-bound APC allows the localization of MACF1 to the cell membrane, which is required for microtubule capture and stabilization. [Definition Source: UniProt]"@en ;
rdfs:isDefinedBy ;
rdfs:label "HER2 (CB11)"@en ;
ontology:associatedDisease obo:MONDO_0005130 ;
ontology:associatedKeywordInDiagnosis "HER2" ;
ontology:hasSemanticArea ontology:test .
### https://w3id.org/examode/ontology/HPVInfection
ontology:HPVInfection rdf:type owl:Class ;
rdfs:subClassOf ontology:Finding ;
owl:disjointWith ontology:IntestinalAbnormality ,
ontology:Koilocyte ,
ontology:LungCarcinomaFinding ;
terms:conformsTo ;
rdfs:comment "A cervix disease may present or not the human papilloma virus."@en ,
"An infectious process caused by a human papillomavirus. This infection can cause abnormal tissue growth."@en ;
rdfs:isDefinedBy obo:MONDO_0005161 ;
rdfs:label "Humaan Papillomavirus-Infectie"@nl ,
"Human Papilloma Virus Infection"@en ,
"Infezione da Papillomavirus Umano"@it ;
ontology:annotatedRule "presence of code D0445** in field 'Diagnosi'" ;
ontology:associatedDisease obo:MONDO_0002974 ;
ontology:hasOntobeeAnnotation "Human papilloma Virus infection; Human papillomavirus disease or disorder; Human Papillomavirus infection; Human papillomavirus infectious disease; Human papillomavirus caused disease or disorder" ;
ontology:hasSNOMEDCode "D044500" ;
ontology:hasSemanticArea obo:NCIT_C15220 ;
ontology:internalNotes "original SNOMED D0445" .
### https://w3id.org/examode/ontology/ImmunohistochemicalTest
ontology:ImmunohistochemicalTest rdf:type owl:Class ;
rdfs:subClassOf ontology:Test ;
obo:NCIT_P106 "Occupational Activity" ;
terms:conformsTo ;
rdfs:comment "A diagnostic test in which an antibody is used to link a cellular antigen specifically to a stain that can be seen with a microscope. [Definition Source: NCI]"@en ;
rdfs:isDefinedBy obo:NCIT_C51944 ;
rdfs:label "Immunohistochemical Test"@en ,
"Immunohistochemische Test"@nl ,
"Test Immunoistochimico"@it ;
ontology:associatedDisease obo:MONDO_0002032 ;
ontology:associatedKeywordInDiagnosis """presence of word “CD3”/“test immunoistochimico”
/“colorazione immunoistochimica”""" ;
ontology:hasSemanticArea ontology:test .
### https://w3id.org/examode/ontology/Immunoprecipitation
ontology:Immunoprecipitation rdf:type owl:Class ;
rdfs:subClassOf ontology:BooleanCheckElement ;
terms:conformsTo ;
rdfs:comment "Antigen aggregation with antibody, in the right ratios, to cause precipitation. [Definition Source: NCI]"@en ;
rdfs:isDefinedBy obo:NCIT_C16724 ;
rdfs:label "Immunoprecipitatie"@nl ,
"Immunoprecipitation"@en ,
"Immunoprecipitazione"@it ;
ontology:associatedDisease obo:MONDO_0002032 ;
ontology:hasSNOMEDCode "P382000" ;
ontology:hasSemanticArea ontology:test .
### https://w3id.org/examode/ontology/InconclusiveOutcome
ontology:InconclusiveOutcome rdf:type owl:Class ;
rdfs:subClassOf [ rdf:type owl:Class ;
owl:unionOf ( ontology:CeliacOutcome
ontology:CervixOutcome
ontology:ColonOutcome
ontology:LungOutcome
)
] ;
rdfs:comment "Inconclusive Outcome. Not enough tissue or not enough evidence was present to decide for a negative or positive outcome."@en ;
rdfs:label "Inconclusive Outcome"@en ,
"Onduidelijk Resultaat"@nl ,
"Risultato Inconcludente"@it ;
ontology:hasSemanticArea obo:NCIT_C15220 .
### https://w3id.org/examode/ontology/InconclusiveResultType
ontology:InconclusiveResultType rdf:type owl:Class ;
rdfs:comment "Class describing why the clinical case resulted inconclusive."@en ;
rdfs:label "Inconclusive Outcome Type"@en ,
"Onduidelijk Resultaattype"@nl ,
"Tipo di Risultato Inconcludente"@it ;
ontology:hasSemanticArea obo:NCIT_C15220 .
### https://w3id.org/examode/ontology/Intervention
ontology:Intervention rdf:type owl:Class ;
obo:NCIT_P325 "The drug, device, therapy, or process under investigation in a clinical study that is believed to have an effect on outcomes of interest in a study (e.g., health-related quality of life, efficacy, safety, pharmacoeconomics). See also: test articles; devices; drug product; medicinal product; combination product.; In medicine, a treatment or action taken to prevent or treat disease, or improve health in other ways."@en ;
terms:conformsTo ;
oboInOwl:hasExactSynonym "interventionDescription; intervention; Intervention; Procedure; Intervention Strategies; Interventional; Intervention or Procedure"@en ;
rdfs:comment "This general class represents the intervention performed on the patient to obtain the samples that are then studied to find the disease. In particular, this class represents the attribute 'MATERIALI' in the AOEC Database, and the attribute METHOD in the TCGA database."@en ;
rdfs:isDefinedBy obo:NCIT_C25218 ;
rdfs:label "Intervention or Procedure"@en ,
"Intervento o Procedura"@it ,
"Tussenkomst of Procedure"@nl ;
ontology:definition "An activity that produces an effect, or that is intended to alter the course of a disease in a patient or population. This is a general term that encompasses the medical, social, behavioral, and environmental acts that can have preventive, therapeutic, or palliative effects."@en ;
ontology:hasSemanticArea ontology:General ,
ontology:procedure .
### https://w3id.org/examode/ontology/InterventionType
ontology:InterventionType rdf:type owl:Class ;
rdfs:comment "Class describing the type of intervention or procedure performed."@en ;
rdfs:label "Intervention or Procedure Type"@en ,
"Tipo di intervento o procedura"@it ,
"Type Tussenkomst of Procedure"@nl ;
ontology:hasSemanticArea ontology:procedure .
### https://w3id.org/examode/ontology/IntestinalAbnormality
ontology:IntestinalAbnormality rdf:type owl:Class ;
rdfs:subClassOf ontology:Finding ;
owl:disjointWith ontology:Koilocyte ,
ontology:LungCarcinomaFinding ;
rdfs:comment "Abnormality in celiac outcomes."@en ;
rdfs:label "Anomalia relativa all'Intestino"@it ,
"Intestinal Abnormality"@en ,
"Intestinale Afwijking"@nl ;
ontology:hasSemanticArea obo:NCIT_C15220 .
### https://w3id.org/examode/ontology/KI67
ontology:KI67 rdf:type owl:Class ;
rdfs:subClassOf ontology:FloatCheckElement ;
terms:conformsTo ;
rdfs:comment "Required to maintain individual mitotic chromosomes dispersed in the cytoplasm following nuclear envelope disassembly (PubMed:27362226). Associates with the surface of the mitotic chromosome, the perichromosomal layer, and covers a substantial fraction of the chromosome surface (PubMed:27362226). Prevents chromosomes from collapsing into a single chromatin mass by forming a steric and electrostatic charge barrier: the protein has a high net electrical charge and acts as a surfactant, dispersing chromosomes and enabling independent chromosome motility (PubMed:27362226). Binds DNA, with a preference for supercoiled DNA and AT-rich DNA (PubMed:10878551). Does not contribute to the internal structure of mitotic chromosomes (By similarity). May play a role in chromatin organization (PubMed:24867636). It is however unclear whether it plays a direct role in chromatin organization or whether it is an indirect consequence of its function in maintaining mitotic chromosomes dispersed (Probable). [Definition Source: UniProt]"@en ;
rdfs:isDefinedBy ;
rdfs:label "Marcatore di proliferazione della proteina Ki-67"@it ,
"Proliferatie marker proteïne Ki-67"@nl ,
"Proliferation marker protein Ki-67"@en ;
ontology:associatedDisease obo:MONDO_0008903 ;
ontology:associatedKeywordInDiagnosis "Ki-67" ;
ontology:hasSemanticArea ontology:test .
### https://w3id.org/examode/ontology/Koilocyte
ontology:Koilocyte rdf:type owl:Class ;
rdfs:subClassOf ontology:Finding ;
owl:disjointWith ontology:LungCarcinomaFinding ;
terms:conformsTo ;
oboInOwl:hasExactSynonym "Koilocyte; Koilocytotic Squamous Cell"@en ;
rdfs:comment "Koilocytes are epithelial cells containing a hyperchromatic nucleus that is acentrically displaced by perinuclear vacuole(s), and these morphological alterations are used by pathologists to help identify HPV-infected epithelial cells in Pap smears. [Definition Source: PMID 18688031]"@en ;
rdfs:isDefinedBy obo:NCIT_C36808 ;
rdfs:label "Cellula Squamosa Cilocitotica"@it ,
"Koilocytotic Squamous Cell"@en ,
"Koilocytotische Plaveiselcel"@nl ;
ontology:associatedDisease obo:MONDO_0002974 ;
ontology:hasSemanticArea obo:NCIT_C15220 .
### https://w3id.org/examode/ontology/LCLC
ontology:LCLC rdf:type owl:Class ;
rdfs:subClassOf ontology:NSCLC ;
terms:conformsTo ;
oboInOwl:hasExactSynonym "lung large cell carcinoma; large cell lung carcinoma; large cell lung cancer; large cell undifferentiated lung carcinoma; large cell carcinoma of the lung; large cell carcinoma of lung; anaplastic lung carcinoma" ;
oboInOwl:hasRelatedSynonym "LCLC" ;
rdfs:comment "A poorly differentiated non-small cell lung carcinoma composed of large polygonal cells without evidence of glandular or squamous differentiation. There is a male predilection. [Definition Source: NCI]"@en ;
rdfs:isDefinedBy obo:MONDO_0003050 ;
rdfs:label "Carcinoma Polmonare a Grandi Cellule"@it ,
"Grootcellig Longcarcinoom"@nl ,
"Lung Large Cell Carcinoma"@en ;
ontology:associatedDisease obo:MONDO_0008903 ;
ontology:hasSNOMEDCode "M801090" ;
ontology:hasSemanticArea obo:NCIT_C15220 .
### https://w3id.org/examode/ontology/LabFinding
ontology:LabFinding rdf:type owl:Class ;
rdfs:comment "This class is used to contain information about the celiac disease, the IEL, the villli to crypt ratio and the villi status."@en ;
rdfs:label "Laboratorium Bevinding"@nl ,
"Laboratory Finding"@en ,
"Risultati di Laboratorio"@it ;
ontology:hasSemanticArea obo:NCIT_C15220 .
### https://w3id.org/examode/ontology/LungAdenocarcinoma
ontology:LungAdenocarcinoma rdf:type owl:Class ;
rdfs:subClassOf ontology:NSCLC ;
terms:conformsTo ;
oboInOwl:hasExactSynonym "lung adenocarcinoma; bronchogenic lung adenocarcinoma; nonsmall cell adenocarcinoma; non-small cell lung adenocarcinoma; adenocarcinoma of the lung; adenocarcinoma of lung" ;
rdfs:comment "A carcinoma that arises from the lung and is characterized by the presence of malignant glandular epithelial cells. There is a male predilection with a male to female ratio of 2:1. Usually lung adenocarcinoma is asymptomatic and is identified through screening studies or as an incidental radiologic finding. If clinical symptoms are present they include shortness of breath, cough, hemoptysis, chest pain, and fever. Tobacco smoke is a known risk factor. [Definition Source: NCI]"@en ;
rdfs:isDefinedBy obo:MONDO_0005061 ;
rdfs:label "Adenocarcinoma Polmonare"@it ,
"Long Adenocarcinoom"@nl ,
"Lung Adenocarcinoma"@en ;
ontology:associatedDisease obo:MONDO_0008903 ;
ontology:hasSNOMEDCode "M814030" ;
ontology:hasSemanticArea obo:NCIT_C15220 .
### https://w3id.org/examode/ontology/LungAnatomicalEntity
ontology:LungAnatomicalEntity rdf:type owl:Class ;
rdfs:subClassOf ontology:AnatomicalEntity ;
rdfs:comment "Class describing biological entities related to lung cancer."@en ;
rdfs:label "Entità Anatomica relativa al Tumore ai Polmoni"@it ,
"Long Anatomische Entiteit"@nl ,
"Lung Anatomical Entity"@en ;
ontology:hasSemanticArea obo:NCIT_C13717 .
### https://w3id.org/examode/ontology/LungCarcinoma
ontology:LungCarcinoma rdf:type owl:Class ;
owl:equivalentClass [ rdf:type owl:Restriction ;
owl:onProperty ontology:presenceOf ;
owl:someValuesFrom ontology:LungCarcinomaFinding
] ;
rdfs:subClassOf ontology:LungPositiveOutcome ;
terms:conformsTo ;
oboInOwl:hasBroadSynonym "cancer of lung; cancer of the lung; lung cancer; lung cancer, NOS" ;
oboInOwl:hasExactSynonym "lung carcinoma; carcinoma of lung; carcinoma of the lung" ;
rdfs:comment "A carcinoma that arises from epithelial cells of the lung. [Definition Source: https://orcid.org/0000-0002-6601-2165]"@en ;
rdfs:isDefinedBy obo:MONDO_0005138 ;
rdfs:label "Carcinoma Polmonare"@it ,
"Longcarcinoom"@nl ,
"Lung Carcinoma"@en ;
ontology:associatedDisease obo:MONDO_0008903 ;
ontology:hasSNOMEDCode "M801030" ;
ontology:hasSemanticArea obo:NCIT_C15220 .
### https://w3id.org/examode/ontology/LungCarcinomaFinding
ontology:LungCarcinomaFinding rdf:type owl:Class ;
rdfs:subClassOf ontology:Finding ;
rdfs:isDefinedBy "Finding in outcomes that tested positive for Lung Carcinoma or any of its subclasses."@en ;
rdfs:label "Longcarcinoom Vinden"@nl ,
"Lung Carcinoma Finding"@en ,
"Scoperta nel Carcinoma Polmonare"@it ;
ontology:associatedDisease obo:MONDO_0008903 ;
ontology:hasSemanticArea obo:NCIT_C15220 .
### https://w3id.org/examode/ontology/LungClinicalCaseReport
ontology:LungClinicalCaseReport rdf:type owl:Class ;
owl:equivalentClass [ rdf:type owl:Restriction ;
owl:onProperty ontology:hasOutcome ;
owl:allValuesFrom ontology:LungOutcome
] ;
rdfs:subClassOf ontology:ClinicalCaseReport ;
rdfs:comment "Class representing all lung cancer cases."@en ;
rdfs:label "Caso Clinico di Cancro ai Polmoni"@it ,
"Klinisch Geval van Longkanker"@nl ,
"Lung Clinical Case Report"@en ;
ontology:hasSemanticArea ontology:general .
### https://w3id.org/examode/ontology/LungIntervention
ontology:LungIntervention rdf:type owl:Class ;
owl:equivalentClass [ rdf:type owl:Restriction ;
owl:onProperty ontology:hasLocation ;
owl:allValuesFrom ontology:LungAnatomicalEntity
] ;
rdfs:subClassOf ontology:Intervention ;
rdfs:comment "Class describing interventions or procedures related to lung cancer."@en ;
rdfs:label "Intervento o Procedura relativa al Cancro ai Polmoni"@it ,
"Longkanker tussenkomst of procedure"@nl ,
"Lung Cancer Intervention or Procedure"@en ;
ontology:hasSemanticArea ontology:procedure .
### https://w3id.org/examode/ontology/LungInterventionType
ontology:LungInterventionType rdf:type owl:Class ;
rdfs:subClassOf ontology:InterventionType ;
rdfs:comment "Class describing the type of intervention or procedure related to lung cancer."@en ;
rdfs:label "Lung Intervention or Procedure Type"@en ,
"Tipo di Intervento o Procedura relativa al Cancro ai Polmoni"@it ,
"Type Longkanker Tussenkomst of Procedure"@nl ;
ontology:hasSemanticArea ontology:procedure .
### https://w3id.org/examode/ontology/LungOutcome
ontology:LungOutcome rdf:type owl:Class ;
owl:equivalentClass [ rdf:type owl:Restriction ;
owl:onProperty ontology:hasIntervention ;
owl:allValuesFrom ontology:LungIntervention
] ,
[ rdf:type owl:Restriction ;
owl:onProperty ontology:hasLocation ;
owl:allValuesFrom ontology:LungAnatomicalEntity
] ;
rdfs:subClassOf ontology:Outcome ;
rdfs:comment "Class representing all outcomes of lung clinical case reports."@en ;
rdfs:label "Lung Outcome"@en ,
"Resultaat van Longkanker"@nl ,
"Risultato di Cancro ai Polmoni"@it ;
ontology:hasSemanticArea obo:NCIT_C15220 .
### https://w3id.org/examode/ontology/LungPOType
ontology:LungPOType rdf:type owl:Class ;
rdfs:subClassOf ontology:PositiveResultType ;
rdfs:comment "Class describing for which type of lung cancer the clinical case tested positive."@en ;
rdfs:label "Lung Positive Outcome Type"@en ,
"Tipo di Risultato Positivo al Cancro ai Polmoni"@it ,
"Type Longkanker Positief Resultaat"@nl ;
ontology:hasSemanticArea obo:NCIT_C15220 .
### https://w3id.org/examode/ontology/LungPositiveOutcome
ontology:LungPositiveOutcome rdf:type owl:Class ;
owl:equivalentClass [ rdf:type owl:Restriction ;
owl:onProperty ontology:positiveType ;
owl:allValuesFrom ontology:LungPOType
] ;
rdfs:subClassOf ontology:LungOutcome ,
ontology:PositiveOutcome ;
rdfs:comment "Positive Outcome, i.e., something related to lung cancer has been found in the patient."@en ;
rdfs:label "Lung Positive Outcome"@en ,
"Positieve Uitkomst van Longkanker"@nl ,
"Risulato Positivo di Cancro ai Polmoni"@it ;
ontology:hasSemanticArea obo:NCIT_C15220 .
### https://w3id.org/examode/ontology/LungSurgery
ontology:LungSurgery rdf:type owl:Class ;
rdfs:subClassOf ontology:LungIntervention ,
ontology:SurgicalProcedure ;
rdfs:comment "Class describing surgical procedures related to lung cancer."@en ;
rdfs:label "Intervento Chirurgico relativo al Cancro ai Polmoni"@it ,
"Longkanker Chirurgische Ingreep"@nl ,
"Lung Cancer Surgical Procedure"@en ;
ontology:hasSemanticArea ontology:procedure .
### https://w3id.org/examode/ontology/LungSurgeryType
ontology:LungSurgeryType rdf:type owl:Class ;
rdfs:subClassOf ontology:LungInterventionType ,
ontology:SurgeryType ;
rdfs:comment "Class describing surgical procedure type related to lung cancer."@en ;
rdfs:label "Lung Surgery Type"@en ,
"Tipo di Intervento Chirurgico relativo al Tumore ai Polmoni"@it ,
"Type Longkanker Chirurgische Ingreep"@nl ;
ontology:hasSemanticArea ontology:procedure .
### https://w3id.org/examode/ontology/MalignantLungNeoplasm
ontology:MalignantLungNeoplasm rdf:type owl:Class ;
rdfs:subClassOf ontology:NSCLC ;
terms:conformsTo ;
oboInOwl:hasExactSynonym "Malignant Lung Tumor; Malignant Lung Neoplasm; Malignant Tumor of the Lung; Malignant Neoplasm of Lung; Malignant Neoplasm of the Lung; Malignant Tumor of Lung"@en ;
rdfs:comment "A primary or metastatic malignant neoplasm involving the lung. [Definition Source: NCI]"@en ;
rdfs:isDefinedBy obo:NCIT_C7377 ;
rdfs:label "Kwaadaardige Longneoplasma"@nl ,
"Malignant Lung Neoplasm"@en ,
"Neoplasia Polmonare Maligna"@it ;
ontology:associatedDisease obo:MONDO_0008903 ;
ontology:hasSNOMEDCode "M800034" ,
"M800130" ;
ontology:hasSemanticArea obo:NCIT_C15220 .
### https://w3id.org/examode/ontology/MetastaticNeoplasm
ontology:MetastaticNeoplasm rdf:type owl:Class ;
rdfs:subClassOf ontology:LungAdenocarcinoma ;
terms:conformsTo ;
oboInOwl:hasExactSynonym "Metastatic Tumor; metastasis; Neoplasm, metastatic; Metastatic Disease; Tumor, metastatic; Metastatic; Metastatic Neoplasm; Metastasis"@en ,
"metastatic disease; metastatic neoplasm; metastatic tumor"@en ;
rdfs:comment "A tumor that has spread from its original (primary) site of growth to another site, close to or distant from the primary site. Metastasis is characteristic of advanced malignancies, but in rare instances can be seen in neoplasms lacking malignant morphology. [Definition Source: NCI]"@en ;
rdfs:isDefinedBy obo:MONDO_0024883 ;
rdfs:label "Metastatic Neoplasm"@en ,
"Neoplasia Metastatica"@it ,
"Uitgezaaide Neoplasma"@nl ;
ontology:associatedDisease obo:MONDO_0008903 ;
ontology:hasSNOMEDCode "M800060" ,
"M814060" ;
ontology:hasSemanticArea obo:NCIT_C15220 .
### https://w3id.org/examode/ontology/NAPSA
ontology:NAPSA rdf:type owl:Class ;
rdfs:subClassOf ontology:BooleanCheckElement ;
terms:conformsTo ;
rdfs:comment "May be involved in processing of pneumocyte surfactant precursors. [Definition Source: UniProt]"@en ;
rdfs:isDefinedBy ;
rdfs:label "Napsin A"@en ;
ontology:associatedDisease obo:MONDO_0008903 ;
ontology:associatedKeywordInDiagnosis "Napsina" ;
ontology:hasSemanticArea ontology:test .
### https://w3id.org/examode/ontology/NSCLC
ontology:NSCLC rdf:type owl:Class ;
rdfs:subClassOf ontology:LungCarcinoma ;
terms:conformsTo ;
oboInOwl:hasExactSynonym "NSCLC - non-small cell lung cancer; non-small cell lung carcinoma; non-small cell carcinoma of lung; non-small cell carcinoma of the lung; non-small cell cancer of lung; non-small cell lung cancer; non-small cell cancer of the lung; NSCLC" ;
oboInOwl:hasRelatedSynonym "non-small cell lung cancer, NOS; non small cell lung cancer NOS" ;
rdfs:comment "A group of at least three distinct histological types of lung cancer, including non-small cell squamous cell carcinoma, adenocarcinoma, and large cell carcinoma. Non-small cell lung carcinomas have a poor response to conventional chemotherapy. [Definition Source: NCI]"@en ;
rdfs:isDefinedBy obo:MONDO_0005233 ;
rdfs:label "Carcinoma Polmonare Non a Piccole Cellule"@it ,
"Niet-Kleincellig Longcarcinoom"@nl ,
"Non-Small Cell Lung Carcinoma"@en ;
rdfs:seeAlso obo:DOID_3908 ;
ontology:associatedDisease obo:MONDO_0008903 ;
ontology:hasSNOMEDCode "M807030" ;
ontology:hasSemanticArea obo:NCIT_C15220 .
### https://w3id.org/examode/ontology/NegativeResult
ontology:NegativeResult rdf:type owl:Class ;
rdfs:subClassOf [ rdf:type owl:Class ;
owl:unionOf ( ontology:CeliacOutcome
ontology:CervixOutcome
ontology:ColonOutcome
ontology:LungOutcome
)
] ;
rdfs:comment "The presence of a negative result, i.e. normal tissue"@en ;
rdfs:label "Negatief Resultaat"@nl ,
"Negative Result"@en ,
"Risultato Negativo"@it ;
ontology:hasSNOMEDCode "M010100" ;
ontology:hasSemanticArea obo:NCIT_C15220 .
### https://w3id.org/examode/ontology/NoMalignancy
ontology:NoMalignancy rdf:type owl:Class ;
rdfs:subClassOf [ rdf:type owl:Class ;
owl:unionOf ( ontology:CeliacOutcome
ontology:CervixOutcome
ontology:ColonOutcome
ontology:LungOutcome
)
] ;
rdfs:comment "No present of malignancy for one of the diseases included in the ExaMode ontology."@en ;
rdfs:label "Geen Maligniteit"@nl ,
"Nessuna Malignità"@it ,
"No Malignancy"@en ;
ontology:hasSNOMEDCode "M094500" ;
ontology:hasSemanticArea obo:NCIT_C15220 .
### https://w3id.org/examode/ontology/Onset
ontology:Onset rdf:type owl:Class ;
terms:conformsTo ;
rdfs:comment "The age group in which disease manifestations appear. [Definition Source: HPO]"@en ,
"This class represents a generic age group."@en ;
rdfs:isDefinedBy ;
rdfs:label "Gruppo d'età"@it ,
"Leeftijdsgroep"@nl ,
"Onset"@en ;
ontology:hasSemanticArea ontology:general .
### https://w3id.org/examode/ontology/OtherFinding
ontology:OtherFinding rdf:type owl:Class ;
rdfs:subClassOf ontology:LabFinding ;
rdfs:comment "This class contains information about other laboratory finding related to celiac disease, e.g. IEL or number of mitosis per crypt."@en ;
rdfs:label "Altri Risultati di Laboratorio"@it ,
"Andere Laboratorium Bevindingen"@nl ,
"Other Laboratory Finding"@en ;
ontology:associatedDisease obo:MONDO_0005130 ;
ontology:hasSemanticArea obo:NCIT_C15220 .
### https://w3id.org/examode/ontology/Outcome
ontology:Outcome rdf:type owl:Class ;
obo:NCIT_P106 "Finding"@en ;
obo:NCIT_P325 "A specific result or effect that can be measured. Examples of outcomes include decreased pain, reduced tumor size, and improvement of disease.; 1. events or experiences that clinicians or investigators examining the impact of an intervention or exposure measure because they believe such events or experiences may be influenced by the intervention or exposure. 2. (SDTM) The result of carrying out a mathematical or statistical procedure. NOTE: 1. such events and experiences are called clinical outcomes independently of whether they are part of the original question/protocol of the investigation. [1. Guyatt, G., Schunemann H., Dept. epidemiology & statistics, McMaster University-personal communication] See also variable; outcome can be a result of analysis; outcome is more general than endpoint in that it does not necessarily relate to a planned objective of the study.outcome. The measureable characteristic (clinical outcome assessment, biomarker) that is influenced or affected by an individual's baseline state or an intervention as in a clinical trial or other exposure."@en ;
terms:conformsTo ;
oboInOwl:hasExactSynonym "OUT; result; Result; Outcome; outcome"@en ;
rdfs:comment "A class representing a general outcome, whatever it may be (positive, negative, uncertain, not enough information etc)."@en ;
rdfs:isDefinedBy obo:NCIT_C20200 ;
rdfs:label "Outcome"@en ,
"Resultaat"@nl ,
"Risultato"@it ;
ontology:definition "The result of an action."@en ;
ontology:hasSemanticArea obo:NCIT_C15220 .
### https://w3id.org/examode/ontology/P40
ontology:P40 rdf:type owl:Class ;
rdfs:subClassOf ontology:BooleanCheckElement ;
terms:conformsTo ;
rdfs:comment "One of the tests that can be performed to check lung cancer."@en ;
rdfs:label "Endonuclease P40"@en ;
rdfs:seeAlso ;
ontology:associatedDisease obo:MONDO_0008903 ;
ontology:associatedKeywordInDiagnosis "P40" ;
ontology:hasSemanticArea ontology:test .
### https://w3id.org/examode/ontology/P63
ontology:P63 rdf:type owl:Class ;
rdfs:subClassOf ontology:BooleanCheckElement ;
obo:NCIT_P106 "Amino Acid, Peptide, or Protein" ;
obo:UBPROP_0000010 "Tumor protein 63 isoform 2 is the product of an alternative promoter and start codon located in exon 3 of the human TP63 gene. It also has an N-terminally truncated transactivation domain. Expression of isoform 2 may be tissue specific and aberrant expression may be associated with head and neck squamous cell carcinoma. (Atlas of Genetics and Cytogenetics in Oncology and Haematology)" ;
terms:conformsTo ;
oboInOwl:hasExactSynonym "Delta Np63 Alpha; Tumor Protein 63 Isoform 2; Delta-N p63-Alpha; p51; DeltaN-Alpha; P51delNalpha; DeltaNp63 Alpha" ;
rdfs:comment "Tumor protein 63 isoform 2 (586 aa, ; 66 kDa) is encoded by the human TP63 gene. This protein plays a role in the mediation of both transcription and skin development. [Definition Source: NCI]"@en ;
rdfs:isDefinedBy obo:NCIT_C128298 ;
rdfs:label "Tumor Protein 63 Isoform 2"@en ;
ontology:associatedDisease obo:MONDO_0008903 ;
ontology:associatedKeywordInMateriali "P63" ;
ontology:hasSemanticArea ontology:test .
### https://w3id.org/examode/ontology/PSPB
ontology:PSPB rdf:type owl:Class ;
rdfs:subClassOf ontology:BooleanCheckElement ;
terms:conformsTo ;
rdfs:comment "Pulmonary surfactant-associated proteins promote alveolar stability by lowering the surface tension at the air-liquid interface in the peripheral air spaces. SP-B increases the collapse pressure of palmitic acid to nearly 70 millinewtons per meter. [Definition Source: UniProt]"@en ;
rdfs:isDefinedBy ;
rdfs:label "Proteina associata ai tensioattivi polmonari B"@it ,
"Pulmonale surfactant-geassocieerd proteïne B."@nl ,
"Pulmonary surfactant-associated protein B"@en ;
ontology:associatedDisease obo:MONDO_0008903 ;
ontology:hasSemanticArea ontology:test .
### https://w3id.org/examode/ontology/Patient
ontology:Patient rdf:type owl:Class ;
terms:conformsTo ;
rdfs:comment "A person under health care. The person may be waiting for this care or may be receiving it or may have already received it. [Definition source: RxList]"@en ;
rdfs:isDefinedBy "http://purl.obolibrary.org/obo/NCIT_C16960"@en ;
rdfs:label "Geduldig"@nl ,
"Patient"@en ,
"Paziente"@it ;
ontology:hasSemanticArea ontology:general .
### https://w3id.org/examode/ontology/PositiveOutcome
ontology:PositiveOutcome rdf:type owl:Class ;
rdfs:subClassOf ontology:Outcome ;
rdfs:comment "Positive Outcome, i.e., something has been found in the patient. This is the higher class for the positive outcome."@en ;
rdfs:label "Positieve Uitkomst"@nl ,
"Positive Outcome"@en ,
"Risultato Positivo"@it ;
ontology:hasSemanticArea obo:NCIT_C15220 .
### https://w3id.org/examode/ontology/PositiveResultType
ontology:PositiveResultType rdf:type owl:Class ;
rdfs:comment "Class describing for what the clinical case tested positive."@en ;
rdfs:label "Positieve Uitkomst Type"@nl ,
"Positive Outcome Type"@en ,
"Tipo di Risultato Positivo"@it ;
ontology:hasSemanticArea obo:NCIT_C15220 .
### https://w3id.org/examode/ontology/PositiveToCeliacDisease
ontology:PositiveToCeliacDisease rdf:type owl:Class ;
rdfs:subClassOf ontology:CeliacPositiveOutcome ;
terms:conformsTo ;
rdfs:comment "Represents the fact that the patient is actually positive to celiac disease. We use a different entity, instead of the entity \"celiac disease\", because that one is an individual in the ontology, and it is not good practice to have entities that are both individuals and General Classes in the same ontology."@en ;
rdfs:label "Positief voor Coealiakie"@nl ,
"Positive to Celiac Disease"@en ,
"Positivo alla Celiachia"@it ;
rdfs:seeAlso ;
ontology:associatedDisease obo:MONDO_0005130 ;
ontology:hasSNOMEDCode "D547100" ;
ontology:hasSemanticArea obo:NCIT_C15220 .
### https://w3id.org/examode/ontology/SCLC1
ontology:SCLC1 rdf:type owl:Class ;
rdfs:subClassOf ontology:LungCarcinoma ;
terms:conformsTo ;
oboInOwl:hasExactSynonym "oat cell carcinoma of the lung; small cell neuroendocrine carcinoma of the lung; small cell neuroendocrine carcinoma of lung; small cell lung carcinoma; small cell carcinoma of lung; oat cell carcinoma of lung; lung oat cell carcinoma; oat cell lung carcinoma; lung small cell carcinoma; small cell lung cancer; small cell carcinoma of the lung; lung small cell neuroendocrine carcinoma" ;
oboInOwl:hasRelatedSynonym "small cell cancer of the lung; SCLC1" ;
rdfs:comment "Small cell lung cancer (SCLC) is a highly aggressive malignant neoplasm, accounting for 10-15% of lung cancer cases, characterized byrapid growth, and early metastasis. SCLC usually manifests as a large hilar mass with bulky mediastinal lymphadenopathy presenting clinically with chest pain, persistent cough, dyspnea, wheezing, hoarseness, hemoptysis, loss of appetite, weight loss, and neurological and endocrine paraneoplastic syndromes. SCLC is primarily reported in elderly people with a history of long-term tobacco exposure. [Definition Source Orphanet 70573]"@en ;
rdfs:isDefinedBy obo:MONDO_0008433 ;
rdfs:label "Carcinoma Polmonare a Piccole Cellule"@it ,
"Kleincellig Longcarcinoom"@nl ,
"Small Cell Lung Carcinoma"@en ;
ontology:associatedDisease obo:MONDO_0008903 ;
ontology:hasSNOMEDCode "M804130" ;
ontology:hasSemanticArea obo:NCIT_C15220 .
### https://w3id.org/examode/ontology/SYPH
ontology:SYPH rdf:type owl:Class ;
rdfs:subClassOf ontology:BooleanCheckElement ;
dc:title "Synaptophysin" ;
terms:conformsTo ;
rdfs:comment "Possibly involved in structural functions as organizing other membrane components or in targeting the vesicles to the plasma membrane. Involved in the regulation of short-term and long-term synaptic plasticity. [Definition Source: UniProt]"@en ;
rdfs:isDefinedBy ;
rdfs:label "Synaptofysin"@nl ,
"Synaptophysin"@en ;
ontology:associatedDisease obo:MONDO_0008903 ;
ontology:associatedKeywordInDiagnosis "Sinaptofisina" ,
"Syph Human" ;
ontology:hasSemanticArea ontology:test .
### https://w3id.org/examode/ontology/SemanticArea
ontology:SemanticArea rdf:type owl:Class ;
rdfs:subClassOf ontology:Annotation ;
rdfs:comment "A general container for entities that represent semantical areas. Examples of semantical areas include \"General\" (common to all diseases), \"Anatomic Site\", \"Procedure\", \"Diagnosis\"."@en ;
rdfs:label "Area Semantica"@it ,
"Semantic Area"@en ,
"Semantisch Gebied"@nl ;
ontology:hasSemanticArea ontology:general .
### https://w3id.org/examode/ontology/SerratedAdenoma
ontology:SerratedAdenoma rdf:type owl:Class ;
rdfs:subClassOf ontology:Adenoma ;
terms:conformsTo ;
oboInOwl:hasExactSynonym "Traditional Serrated Adenoma; Serrated Adenoma; TSA; Serrated Adenoma Type II; Serrated adenoma; Traditional serrated adenoma"@en ;
rdfs:comment "An adenoma that arises from the large intestine and the appendix. It is characterized by prominent serration of the glands. [Definition Source: NCI]"@en ;
rdfs:isDefinedBy obo:NCIT_C38458 ;
rdfs:label "Adenoma Seghettato"@it ,
"Gekarteld Adenoom"@nl ,
"Serrated Adenoma"@en ;
ontology:associatedDisease obo:MONDO_0002032 ;
ontology:hasSemanticArea obo:NCIT_C15220 .
### https://w3id.org/examode/ontology/SlideDevice
ontology:SlideDevice rdf:type owl:Class ;
terms:conformsTo ;
oboInOwl:hasExactSynonym "Slide; Slide Device Component; Slide Device; Microscope Slide"@en ;
rdfs:comment "A flat rectangular piece of glass on which specimens can be mounted for microscopic study. [Definition Source:NCI]"@en ;
rdfs:isDefinedBy obo:NCIT_C50178 ;
rdfs:label "Schuif"@nl ,
"Slide Device"@en ,
"Vetrino"@it ;
ontology:hasSemanticArea ontology:general .
### https://w3id.org/examode/ontology/SquamousNSCLC
ontology:SquamousNSCLC rdf:type owl:Class ;
rdfs:subClassOf ontology:NSCLC ;
terms:conformsTo ;
oboInOwl:hasExactSynonym "non-small cell squamous lung cancer; non-small cell squamous lung carcinoma; squamous non-small cell lung carcinoma" ;
rdfs:comment "A squamous cell carcinoma that arises from the lung. It is characterized by the presence of large malignant cells. It includes the clear cell and papillary variants of squamous cell carcinoma. [Definition Source: NCI]"@en ;
rdfs:isDefinedBy obo:MONDO_0056806 ;
rdfs:label "Carcinoma Polmonare Squamoso Non a Piccole Cellule"@it ,
"Niet-Kleincellig Plaveiselcelcarcinoom"@nl ,
"Non-Small Cell Squamous Lung Carcinoma"@en ;
ontology:associatedDisease obo:MONDO_0008903 ;
ontology:hasSNOMEDCode "M807030" ;
ontology:hasSemanticArea obo:NCIT_C15220 .
### https://w3id.org/examode/ontology/StringCheckElement
ontology:StringCheckElement rdf:type owl:Class ;
rdfs:subClassOf ontology:CheckElement ;
rdfs:comment "A set of checks controlled on an Immunohistochemical test that can only have a string result."@en ;
rdfs:label "Elemento di Controllo Testuale"@it ,
"String Check Element"@en ,
"Tekenreeks Controle-Element"@nl ;
ontology:hasSemanticArea ontology:test .
### https://w3id.org/examode/ontology/SurgeryType
ontology:SurgeryType rdf:type owl:Class ;
rdfs:subClassOf ontology:InterventionType ;
rdfs:comment "Class describing the type of surgical procedure performed."@en ;
rdfs:label "Surgical Procedure Type"@en ,
"Tipo di Intervento Chirurgico"@it ,
"Type Chirurgische Ingreep"@nl ;
ontology:hasSemanticArea ontology:procedure .
### https://w3id.org/examode/ontology/SurgicalProcedure
ontology:SurgicalProcedure rdf:type owl:Class ;
rdfs:subClassOf ontology:Intervention ;
terms:conformsTo ;
rdfs:comment "A diagnostic or treatment procedure performed by manual and/or instrumental means, often involving an incision and the removal or replacement of a diseased organ or tissue; of or relating to or involving or used in surgery or requiring or amenable to treatment by surgery. [Definition Source: NCI]"@en ;
rdfs:isDefinedBy obo:NCIT_C15329 ;
rdfs:label "Chirurgische Ingreep"@nl ,
"Intervento Chirurgico"@it ,
"Surgical Procedure"@en ;
ontology:hasSemanticArea ontology:procedure .
### https://w3id.org/examode/ontology/TTF1
ontology:TTF1 rdf:type owl:Class ;
rdfs:subClassOf ontology:BooleanCheckElement ;
terms:conformsTo ;
oboInOwl:hasExactSynonym "Transcription termination factor 1" ;
rdfs:comment "Multifunctional nucleolar protein that terminates ribosomal gene transcription, mediates replication fork arrest and regulates RNA polymerase I transcription on chromatin. Plays a dual role in rDNA regulation, being involved in both activation and silencing of rDNA transcription. Interaction with BAZ2A/TIP5 recovers DNA-binding activity. [Definition Source: UniProt]"@en ;
rdfs:isDefinedBy ;
rdfs:label "TTF1 Human"@en ;
ontology:associatedDisease obo:MONDO_0008903 ;
ontology:associatedKeywordInDiagnosis "Transcription termination factor 1" ;
ontology:hasSemanticArea ontology:test .
### https://w3id.org/examode/ontology/Test
ontology:Test rdf:type owl:Class ;
obo:NCIT_P106 "Activity" ;
terms:conformsTo ;
rdfs:comment "A general class representing a test."@en ;
rdfs:isDefinedBy obo:NCIT_C47891 ;
rdfs:label "Test"@en ,
"Test"@it ,
"Test"@nl ;
ontology:definition "A procedure for critical evaluation; a means of determining the presence, quality, or truth of something"@en ;
ontology:hasSemanticArea ontology:test .
### https://w3id.org/examode/ontology/VIME
ontology:VIME rdf:type owl:Class ;
rdfs:subClassOf ontology:BooleanCheckElement ;
terms:conformsTo ;
rdfs:comment """Vimentins are class-III intermediate filaments found in various non-epithelial cells, especially mesenchymal cells. Vimentin is attached to the nucleus, endoplasmic reticulum, and mitochondria, either laterally or terminally.
Involved with LARP6 in the stabilization of type I collagen mRNAs for CO1A1 and CO1A2. [Definition Source: UniProt]"""@en ;
rdfs:isDefinedBy ;
rdfs:label "Vimentin"@en ;
ontology:associatedDisease obo:MONDO_0008903 ;
ontology:hasSemanticArea ontology:test .
### https://w3id.org/examode/ontology/VilliFinding
ontology:VilliFinding rdf:type owl:Class ;
rdfs:subClassOf ontology:LabFinding ;
rdfs:comment "This class contains information about villi status"@en ;
rdfs:label "Risultati di Laboratorio relativi ai Vilii"@it ,
"Villi Laboratorium Bevinding"@nl ,
"Villi Laboratory Finding"@en ;
ontology:associatedDisease obo:MONDO_0005130 ;
ontology:hasSemanticArea obo:NCIT_C15220 .
#################################################################
# Individuals
#################################################################
### http://dbpedia.org/page/Radboud_University_Nijmegen
rdf:type owl:NamedIndividual ,
skos:Concept ,
foaf:organization ;
rdfs:comment "Radboud University Nijmegen (abbreviated as RU, Dutch: Radboud Universiteit Nijmegen, formerly Katholieke Universiteit Nijmegen) is a public university with a strong focus on research located in Nijmegen, the Netherlands. It was established on 17 October 1923 and is situated in the oldest city of the Netherlands. The RU has seven faculties and enrolls over 19,900 students. It was internationally ranked 156th by the QS World University Rankings." ;
rdfs:label "Radboud Universiteit Nijmegen"@it ,
"Radboud Universiteit Nijmegen"@nl ,
"Radboud University Nijmegen"@en ;
ontology:hasSemanticArea ontology:General .
### http://orcid.org/0000-0001-9114-8737
rdf:type owl:NamedIndividual ,
;
rdfs:label "Melissa Anne Haendel" .
### http://purl.obolibrary.org/obo/BTO_0002073
obo:BTO_0002073 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:CervixAnatomicalEntity ;
owl:sameAs obo:NCIT_C33554 ;
skos:broaderTransitive obo:UBERON_0004801 ;
obo:NCIT_P325 "FMA: Epithelium which consists of a single layer of epithelial cells. Examples: endothelium, mesothelium, glandular squamous epithelium.,UWDA: Epithelium which consists of a single layer of epithelial cells. Examples: endothelium, mesothelium, glandular squamous epithelium.,NCI: Epithelium composed of a single layer of cells attached to a basement membrane."@en ;
terms:conformsTo ;
rdfs:comment "Squamous epithelium composed of a single layer of cells. [Defintion Source: Dorlands_Medical_Dictionary:MerckSource]"@en ;
rdfs:label "Bestrating Epitheel"@nl ,
"Epitelio della Pavimentazione"@it ,
"Pavement Epithelium"@en ;
ontology:associatedDisease obo:MONDO_0002974 ;
ontology:hasSemanticArea obo:NCIT_C13717 .
### http://purl.obolibrary.org/obo/FMA_17055
obo:FMA_17055 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:CeliacAnatomicalEntity ;
skos:broaderTransitive obo:UBERON_0001165 ;
terms:conformsTo ;
rdfs:comment "Mucosa found in the gastric antrum. [Definition Source: Humpath.com - Human pathology]"@en ;
rdfs:label "Mucosa dell'Antro Pilorico"@it ,
"Mucosa of Pyloric Antrum"@en ,
"Mucosa van Pylorus Antrum"@nl ;
ontology:associatedDisease obo:MONDO_0005130 ;
ontology:hasSemanticArea obo:NCIT_C13717 .
### http://purl.obolibrary.org/obo/FMA_7397
obo:FMA_7397 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:LungAnatomicalEntity ;
skos:broaderTransitive obo:NCIT_C32998 ;
terms:conformsTo ;
oboInOwl:hasExactSynonym "Right upper lobar bronchus; Right upper lobe bronchus" ;
rdfs:comment "Part of the right bronchus."@en ;
rdfs:label "Bronco Lobare Superiore Destro"@it ,
"Rechter Superieure Lobaire Bronchus"@nl ,
"Right Superior Lobar Bronchus"@en ;
ontology:associatedDisease obo:MONDO_0008903 ;
ontology:hasSemanticArea obo:NCIT_C13717 .
### http://purl.obolibrary.org/obo/FMA_7404
obo:FMA_7404 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:LungAnatomicalEntity ;
skos:broaderTransitive obo:NCIT_C32998 ;
terms:conformsTo ;
oboInOwl:hasExactSynonym "Bronchus of right lower lobe; Right lower lobe bronchus; Right lower lobar bronchus." ;
rdfs:comment "A region of the bronchus in the lung."@en ;
rdfs:label "Bronco Lobare Inferiore Destro"@it ,
"Rechter Inferieure Lobaire Bronchus"@nl ,
"Right Inferior Lobar Bronchus"@en ;
ontology:associatedDisease obo:MONDO_0008903 ;
ontology:hasSemanticArea obo:NCIT_C13717 .
### http://purl.obolibrary.org/obo/FMA_7423
obo:FMA_7423 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:LungAnatomicalEntity ;
skos:broaderTransitive obo:NCIT_C32998 ;
terms:conformsTo ;
oboInOwl:hasExactSynonym "Left upper lobar bronchus; Bronchus of left upper lobe; Left upper lobe bronchus" ;
rdfs:comment "Part of the left bronchus."@en ;
rdfs:label "Bronco Lobare Superiore Sinistro"@it ,
"Left Superior Lobar Bronchus"@en ,
"Linker Superieure Lobaire Bronchus"@nl ;
ontology:associatedDisease obo:MONDO_0008903 ;
ontology:hasSemanticArea obo:NCIT_C13717 .
### http://purl.obolibrary.org/obo/FMA_7432
obo:FMA_7432 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:LungAnatomicalEntity ;
skos:broaderTransitive obo:NCIT_C32998 ;
terms:conformsTo ;
oboInOwl:hasExactSynonym "Bronchus of left lower lobe; Left lower lobe bronchus; Left lower lobar bronchus" ;
rdfs:comment "A region of the bronchus in the lungs."@en ;
rdfs:label "Bronco Lobare Inferiore Sinistro"@it ,
"Left Inferior Lobar Bronchus"@en ,
"Links Inferieure Lobaire Bronchus"@nl ;
ontology:associatedDisease obo:MONDO_0008903 ;
ontology:hasSemanticArea obo:NCIT_C13717 .
### http://purl.obolibrary.org/obo/GO_0070265
obo:GO_0070265 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:LungCarcinomaFinding ;
terms:conformsTo ;
oboInOwl:hasBroadSynonym "necrosis" ;
oboInOwl:hasExactSynonym "cellular necrosis; necrotic cell death" ,
"metastasize; Metastasis, NOS; metastasis; Tumor Cell Migration; Metastasize; Metastasis"@en ;
rdfs:comment "Note that the word necrosis has been widely used in earlier literature to describe forms of cell death which are now known by more precise terms, such as apoptosis. Necrosis can occur in a regulated fashion, involving a precise sequence of signals."@en ;
rdfs:label "Necrose"@nl ,
"Necrosi"@it ,
"Necrosis"@en ;
rdfs:seeAlso obo:NCIT_C16897 ;
ontology:associatedDisease obo:MONDO_0008903 ;
ontology:definition "A type of cell death that is morphologically characterized by an increasingly translucent cytoplasm, swelling of organelles, minor ultrastructural modifications of the nucleus (specifically, dilatation of the nuclear membrane and condensation of chromatin into small, irregular, circumscribed patches) and increased cell volume (oncosis), culminating in the disruption of the plasma membrane and subsequent loss of intracellular contents. Necrotic cells do not fragment into discrete corpses as their apoptotic counterparts do. Moreover, their nuclei remain intact and can aggregate and accumulate in necrotic tissues. [Defintion Source: PMID:18846107, PMID:20823910]"@en ;
ontology:hasSemanticArea obo:NCIT_C15220 .
### http://purl.obolibrary.org/obo/MONDO_0000751
obo:MONDO_0000751 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:CervixPOType ;
terms:conformsTo ;
oboInOwl:hasExactSynonym "polyp of the cervix uteri; adenomatous polyp of the uterine cervix; uterine cervix polyp; cervical polyp; adenomatous polyp of cervix; uterine cervix adenomatous polyp; adenomatous polyp of uterine cervix; cervix uteri polyp; polyp of cervix; polyp of the uterine cervix; cervix adenomatous polyp; cervix polyp; polyp of cervix uteri; polyp of uterine cervix; cervix uteri adenomatous polyp; polyp of the cervix; adenomatous polyp of the cervix"@en ;
rdfs:comment "A polyp that arises from the surface of the cervix. [Definition Source: NCI]"@en ;
rdfs:label "Cervical Polyp"@en ,
"Cervicale Poliep"@nl ,
"Polipo Cervicale"@it ;
rdfs:seeAlso obo:HP_0030159 ;
ontology:associatedDisease obo:MONDO_0002974 ;
ontology:hasSNOMEDCode "M768002" ,
"M768003" ;
ontology:hasSemanticArea obo:NCIT_C15220 .
### http://purl.obolibrary.org/obo/MONDO_0001932
obo:MONDO_0001932 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:CervixPOType ;
terms:conformsTo ;
oboInOwl:hasExactSynonym "atrophy of vulva; atrophic vulva"@en ;
oboInOwl:hasRelatedSynonym "atrophic vulvitis"@en ;
rdfs:comment """Vaginal atrophy (atrophic vaginitis) is thinning, drying and inflammation of the vaginal walls that may occur when your body has less estrogen. Vaginal atrophy occurs most often after menopause.
For many women, vaginal atrophy not only makes intercourse painful but also leads to distressing urinary symptoms. Because the condition causes both vaginal and urinary symptoms, doctors use the term \"genitourinary syndrome of menopause (GSM)\" to describe vaginal atrophy and its accompanying symptoms."""@en ;
rdfs:label "Atrofische Vulva"@nl ,
"Atrophic Vulva"@en ,
"Vulva Atrofica"@it ;
rdfs:seeAlso ;
ontology:associatedDisease obo:MONDO_0002974 ;
ontology:hasSNOMEDCode "M580000" ;
ontology:hasSemanticArea obo:NCIT_C15220 .
### http://purl.obolibrary.org/obo/MONDO_0002032
obo:MONDO_0002032 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:Disease ;
terms:conformsTo ;
rdfs:comment "A carcinoma that arises from epithelial cells of the colon [Definition Source: https://orcid.org/0000-0002-6601-2165]"@en ;
rdfs:label "Carcinoma del Colon"@it ,
"Colon Carcinoma"@en ,
"Coloncarcinoom"@nl ;
rdfs:seeAlso obo:DOID_1520 ,
obo:NCIT_C4910 ;
ontology:hasSemanticArea ontology:general .
### http://purl.obolibrary.org/obo/MONDO_0002052
obo:MONDO_0002052 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:LungPOType ;
terms:conformsTo ;
oboInOwl:hasBroadSynonym "lymph gland infection"@en ;
oboInOwl:hasExactSynonym "inflammation of lymph node; acute adenitis; chronic lymphadenitis; lymphadenitis; Inflammation of lymph node; acute lymphadenitis; adenitis; lymph node inflammation; chronic adenitis; lymph nodeitis"@en ;
rdfs:comment "Acute or chronic inflammation of one or more lymph nodes. It is usually caused by an infectious process. [Definition Source: NCI]"@en ;
rdfs:label "Linfoadenite"@it ,
"Lymfadenitis"@nl ,
"Lymphadenitis"@en ;
rdfs:seeAlso obo:NCIT_C26821 ;
ontology:associatedDisease obo:MONDO_0008903 ;
ontology:hasSNOMEDCode "M400000" ;
ontology:hasSemanticArea obo:NCIT_C15220 .
### http://purl.obolibrary.org/obo/MONDO_0002974
obo:MONDO_0002974 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:Disease ;
terms:conformsTo ;
oboInOwl:hasBroadSynonym "cervical neoplasm; tumor of the cervix uteri; uterine cervical neoplasm"@en ;
oboInOwl:hasExactSynonym "malignant tumor of uterine cervix; uterine cervix cancer; malignant neoplasm of cervix; malignant neoplasm of uterine cervix; malignant tumor of the uterine cervix; malignant tumor of cervix uteri; malignant cervical neoplasm; cervix cancer; malignant neoplasm of cervix uteri; neoplasm of uterine cervix; malignant neoplasm of the uterine cervix; malignant cervix uteri neoplasm; malignant uterine cervix neoplasm; malignant tumor of cervix; malignant cervix neoplasm; malignant tumor of the cervix uteri; malignant neoplasm of the cervix uteri; malignant cervix uteri tumor; malignant cervix tumor; malignant uterine cervix tumor; cancer of uterine cervix; cervix uteri cancer; malignant cervical tumor; malignant tumor of the cervix; malignant neoplasm of the cervix"@en ;
rdfs:comment "A primary or metastatic malignant neoplasm involving the cervix. [Definition Source: NCI]"@en ;
rdfs:label "Baarmoederhalskanker"@nl ,
"Cancro Cervicale"@it ,
"Cervical Cancer"@en ;
rdfs:seeAlso obo:DOID_4362 ,
obo:NCIT_C9311 ;
ontology:hasSemanticArea ontology:general .
### http://purl.obolibrary.org/obo/MONDO_0004693
obo:MONDO_0004693 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:CervixPOType ;
owl:sameAs obo:MONDO_0042487 ;
skos:broaderTransitive obo:MONDO_0006137 ;
terms:conformsTo ;
oboInOwl:hasExactSynonym "squamous carcinoma in situ; cervical intraepithelial neoplasia grade III with severe dysplasia; stage 0 uterine cervix carcinoma; severe dysplasia of the cervix uteri; stage 0 squamous cell carcinoma; CIN III - carcinoma in situ of cervix; squamous cell carcinoma in-situ; epidermoid cell carcinoma in situ; CIN III - severe dyskaryosis; grade III SIN; carcinoma in situ of uterine cervix; carcinoma, squamous cell, in situ, malignant; grade 3 SIN; uterine cervix in situ carcinoma; squamous intraepithelial neoplasia, grade III; carcinoma in situ of cervix; CIN III; intraepithelial squamous cell carcinoma; grade 3 squamous intraepithelial neoplasia; squamous cell carcinoma in situ; epidermoid carcinoma in situ; grade III squamous intraepithelial neoplasia; severe dysplasia of cervix; cervix Ca in situ"@en ;
oboInOwl:hasRelatedSynonym "squamous carcinoma in situ"@en ;
rdfs:comment "A malignant epithelial neoplasm confined to the squamous epithelium, without invasion of the underlying tissues. [Definition Source: NCI]"@en ;
rdfs:label "Cervicale Squameuze Intra-Epitheliale Neoplasie Graad 3"@nl ,
"Neoplasia Cervicale Squamosa Intraepiteliale di Grado 3"@it ,
"Squamous Carcinoma in Situ"@en ;
rdfs:seeAlso obo:NCIT_C27093 ;
ontology:associatedDisease obo:MONDO_0002974 ;
ontology:hasSNOMEDCode "M740080" ,
"M801020" ;
ontology:hasSemanticArea obo:NCIT_C15220 ;
ontology:internalNotes "originally the SNOMED code was M74008*"@en .
### http://purl.obolibrary.org/obo/MONDO_0005130
obo:MONDO_0005130 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:Disease ;
terms:conformsTo ;
oboInOwl:hasExactSynonym "coeliac disease; non tropical sprue; idiopathic steatorrhea; gluten-induced enteropathy; celiac sprue"@en ;
rdfs:comment "An autoimmune genetic disorder with an unknown pattern of inheritance that primarily affects the digestive tract. It is caused by intolerance to dietary gluten. Consumption of gluten protein triggers an immune response which damages small intestinal villi and prevents adequate absorption of nutrients. Clinical signs include abdominal cramping, diarrhea or constipation and weight loss. If untreated, the clinical course may progress to malnutrition, anemia, osteoporosis and an increased risk of intestinal malignancies. However, the prognosis is favorable with successful avoidance of gluten in the diet. [Definition Source: NCI]"@en ;
rdfs:label "Celiac disease"@en ,
"Celiachia"@it ,
"Coeliakie"@nl ;
rdfs:seeAlso obo:DOID_10608 ,
obo:NCIT_C26714 ;
ontology:hasSemanticArea ontology:general .
### http://purl.obolibrary.org/obo/MONDO_0005131
obo:MONDO_0005131 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:CervixPOType ;
terms:conformsTo ;
oboInOwl:hasBroadSynonym "cervix cancer; cervical cancer, NOS; cervical cancer; cancer of cervix; uterine cervix cancer"@en ;
oboInOwl:hasExactSynonym "cancer of the uterine cervix; carcinoma of the cervix; carcinoma of cervix; carcinoma of the cervix uteri; carcinoma cervix uteri; cancer of uterine cervix; cervical carcinoma; carcinoma of uterine cervix; cervix carcinoma; uterine cervix carcinoma; carcinoma of cervix uteri; cancer of the cervix; cervix uteri carcinoma; carcinoma of the uterine cervix; cancer of cervix"@en ;
rdfs:comment "A carcinoma arising from either the exocervical squamous epithelium or the endocervical glandular epithelium. The major histologic types of cervical carcinoma are: squamous carcinoma, adenocarcinoma, adenosquamous carcinoma, adenoid cystic carcinoma and undifferentiated carcinoma. [Definition Source: NCI]"@en ;
rdfs:label "Carcinoma Cervicale"@it ,
"Cervicaal Carcinoom"@nl ,
"Cervical Carcinoma"@en ;
rdfs:seeAlso obo:NCIT_C9039 ;
ontology:associatedDisease obo:MONDO_0002974 ;
ontology:hasSNOMEDCode "M801030" ;
ontology:hasSemanticArea obo:NCIT_C15220 .
### http://purl.obolibrary.org/obo/MONDO_0005161
obo:MONDO_0005161 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:HPVInfection ;
terms:conformsTo ;
rdfs:comment "A cervix disease may present or not the human papilloma virus."@en ,
"An infectious process caused by a human papillomavirus. This infection can cause abnormal tissue growth. [Definition Source: NCI]"@en ;
rdfs:label "Humaan Papillomavirus-Infectie"@nl ,
"Human Papilloma Virus Infection"@en ,
"Infezione da Papillomavirus Umano"@it ;
rdfs:seeAlso obo:NCIT_C27851 ;
ontology:annotatedRule "presence of code D0445** in field 'Diagnosi'"@en ;
ontology:associatedDisease obo:MONDO_0002974 ;
ontology:hasOntobeeAnnotation "Human papilloma Virus infection; Human papillomavirus disease or disorder; Human Papillomavirus infection; Human papillomavirus infectious disease; Human papillomavirus caused disease or disorder"@en ;
ontology:hasSNOMEDCode "D044500" ;
ontology:hasSemanticArea obo:NCIT_C15220 ;
ontology:internalNotes "original SNOMED D0445"@en .
### http://purl.obolibrary.org/obo/MONDO_0006137
obo:MONDO_0006137 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:CervixPOType ;
skos:broaderTransitive obo:MONDO_0022394 ;
terms:conformsTo ;
oboInOwl:hasExactSynonym "cervical intraepithelial neoplasia grade 2/3; high grade dysplasia; moderate or severe dysplasia"@en ;
rdfs:comment "A neoplastic process in the cervix characterized by morphologic features of both moderate and severe intraepithelial neoplasia. [Definition Source: NCI]"@en ;
rdfs:label "Cervical Intraepithelial Neoplasia Grade 2/3"@en ,
"Cervicale Intra-Epitheliale Neoplasie Graad 2/3"@nl ,
"Neoplasia Intraepiteliale Cervicale di Grado 2/3"@it ;
rdfs:seeAlso obo:NCIT_C94676 ;
ontology:associatedDisease obo:MONDO_0002974 ;
ontology:hasSemanticArea obo:NCIT_C15220 .
### http://purl.obolibrary.org/obo/MONDO_0006143
obo:MONDO_0006143 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:CervixPOType ;
skos:broaderTransitive obo:MONDO_0005131 ;
terms:conformsTo ;
oboInOwl:hasExactSynonym """squamous cervical cancer; cervical squamous cell cancer; squamous cell carcinoma of cervix uteri; squamous cell carcinoma of cervix; squamous cell carcinoma of the uterine cervix; cervix uteri squamous cell carcinoma; uterine cervix squamous cell carcinoma; cervical squamous cell carcinoma; cervix squamous cell carcinoma; squamous cell carcinoma of the cervix uteri; squamous cell carcinoma of the cervix; squamous cell carcinoma of uterine cervix
has_related_synonym: cervical squamous cell carcinoma, NOS; CESC; cervical squamous cell carcinoma, not otherwise specified"""@en ;
rdfs:comment "A squamous cell carcinoma arising from the cervical epithelium. It usually evolves from a precancerous cervical lesion. Increased numbers of sexual partners and human papillomavirus (HPV) infection are risk factors for cervical squamous cell carcinoma. The following histologic patterns have been described: conventional squamous cell carcinoma, papillary squamous cell carcinoma, transitional cell carcinoma, lymphoepithelioma-like carcinoma, verrucous carcinoma, condylomatous carcinoma and spindle cell carcinoma. Survival is most closely related to the stage of disease at the time of diagnosis. [Definition Source: NCI]"@en ;
rdfs:label "Carcinoma a Cellule Squamose Cervicali"@it ,
"Cervicaal Plaveiselcelcarcinoom"@nl ,
"Cervical Squamous Cell Carcinoma"@en ;
rdfs:seeAlso obo:NCIT_C4028 ;
ontology:associatedDisease obo:MONDO_0002974 ;
ontology:hasSNOMEDCode "M807030" ;
ontology:hasSemanticArea obo:NCIT_C15220 ;
ontology:internalNotes "previous SNOMED M80703*"@en .
### http://purl.obolibrary.org/obo/MONDO_0008903
obo:MONDO_0008903 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:Disease ;
terms:conformsTo ;
oboInOwl:hasExactSynonym "malignant neoplasm of the lung; lung cancer; malignant lung neoplasm; cancer of lung; malignant tumor of the lung; malignant tumor of lung; malignant neoplasm of lung; malignant lung tumor."@en ;
oboInOwl:hasRelatedSynonym "lung neoplasm; Nonsmall cell lung cancer; alveolar cell carcinoma; lung cancer, protection against."@en ;
rdfs:comment "A malignant neoplasm involving the lung. [Definition Source: https://orcid.org/0000-0002-6601-2165]"@en ;
rdfs:label "Cancro ai Polmoni"@it ,
"Longkanker"@nl ,
"Lung cancer"@en ;
rdfs:seeAlso obo:DOID_1324 ,
obo:NCIT_C4878 ;
ontology:hasSemanticArea ontology:general .
### http://purl.obolibrary.org/obo/MONDO_0019338
obo:MONDO_0019338 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:LungPOType ;
terms:conformsTo ;
oboInOwl:hasBroadSynonym "benign lymphogranulomatosis of Schaumann; lupus pernio of Besnier; miliary lupoid of boeck"@en ;
oboInOwl:hasExactSynonym "besnier-Boeck-Schaumann syndrome; sarcoid; Darier-Roussy sarcoid; Boeck's sarcoid; Besnier-Boeck-Schaumann disease; Boeck's sarcoidosis; lymphogranulomatosis; sarcoidosis; Boeck sarcoid"@en ;
rdfs:comment "Sarcoidosis is a multisystemic disorder of unknown cause characterized by the formation of immune granulomas in involved organs. [Definition Source: Orhpanet 797]"@en ;
rdfs:label "Sarcoidosi"@it ,
"Sarcoidosis"@en ,
"Sarcoïdose"@nl ;
rdfs:seeAlso obo:NCIT_C34995 ;
ontology:associatedDisease obo:MONDO_0008903 ;
ontology:hasSNOMEDCode "D028280" ;
ontology:hasSemanticArea obo:NCIT_C15220 .
### http://purl.obolibrary.org/obo/MONDO_0022394
obo:MONDO_0022394 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:CervixPOType ;
terms:conformsTo ;
oboInOwl:hasExactSynonym "cervical intraepithelial neoplasia"@en ;
oboInOwl:hasRelatedSynonym "Intraepithelial Neoplasia of the Uterine Cervix; Intraepithelial Neoplasms, Cervical; Neoplasm, Cervical Intraepithelial; Intraepithelial Neoplasm, Cervical; Cervix Intraepithelial Neoplasia; Cervical Intraepithelial Neoplasms; Intraepithelial Neoplasia of the Cervix Uteri; Neoplasms, Cervical Intraepithelial; Intraepithelial Neoplasia of Uterine Cervix; Neoplasia, Cervical Intraepithelial; Cervical Intraepithelial Neoplasm; Intraepithelial Neoplasia, Cervical; Cervical intraepithelial neoplasia; NEOPL CERVICAL INTRAEPITHELIAL; Uterine Cervix Intraepithelial Neoplasia; Intraepithelial Neoplasia of Cervix Uteri; Intraepithelial Neoplasia of the Cervix; Cervix Uteri Intraepithelial Neoplasia; Intraepithelial Neoplasia of Cervix; Cervical Dysplasia; Cervical Intraepithelial Neoplasia"@en ;
rdfs:comment "Squamous or glandular intraepithelial neoplasia that affects the cervical mucosal epithelium. There is no evidence of stromal invasion. According to the degree of cellular atypia and the associated architectural changes, it is classified as low or high grade. [Definition Source: NCI]"@en ;
rdfs:label "Cervical Intraepithelial Neoplasia"@en ,
"Cervicale intra-epitheliale neoplasie"@nl ,
"Neoplasia Intraepiteliale Cervicale"@it ;
rdfs:seeAlso obo:NCIT_C3782 ,
obo:OMIT_0018522 ;
ontology:associatedDisease obo:MONDO_0002974 ;
ontology:hasSemanticArea obo:NCIT_C15220 .
### http://purl.obolibrary.org/obo/MONDO_0042487
obo:MONDO_0042487 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:CervixPOType ;
skos:broaderTransitive obo:MONDO_0005131 ;
terms:conformsTo ;
oboInOwl:hasExactSynonym "severe dysplasia of the cervix uteri aJCC v6; uterine cervix intraepithelial neoplasia grade 3 aJCC v6; intraepithelial neoplasia of the cervix grade 3 aJCC v6; carcinoma in situ of the uterine cervix aJCC v6; intraepithelial neoplasia of the cervix uteri grade 3 aJCC v6; severe dysplasia of cervix aJCC v6; severe dysplasia of cervix; intraepithelial neoplasia of uterine cervix grade 3 aJCC v6; cervical intraepithelial neoplasia grade 3 aJCC v6; uterine cervix carcinoma in situ aJCC v6; carcinoma in situ of the cervix aJCC v6; FIGO stage 0 carcinoma of uterine cervix; severe dysplasia of cervix uteri aJCC v6; cervix uteri intraepithelial neoplasia grade 3 aJCC v6; grade 3 cervical intraepithelial neoplasia aJCC v6; stage 0 uterine cervix carcinoma; carcinoma in situ of uterine cervix aJCC v6; CIN III - severe dyskaryosis; cervix uteri Severe dysplasia aJCC v6; FIGO stage 0 cervical carcinoma; cervix uteri carcinoma in situ aJCC v6; stage 0 cervical cancer aJCC v6; FIGO stage 0 carcinoma of the cervix uteri; cervical carcinoma in situ aJCC v6; uterine cervix Severe dysplasia aJCC v6; carcinoma in situ of the cervix uteri aJCC v6; severe cervical dysplasia aJCC v6; FIGO stage 0 carcinoma of cervix uteri; carcinoma in situ of cervix aJCC v6; carcinoma in situ of uterine cervix; carcinoma in situ of cervix uteri aJCC v6; cervix intraepithelial neoplasia grade 3 aJCC v6; FIGO stage 0 carcinoma of the uterine cervix; CIN III; cervical intraepithelial neoplasia grade III with severe dysplasia; cervical Severe dysplasia aJCC v6; CIN III - carcinoma in situ of cervix; FIGO stage 0 uterine cervix carcinoma; CIN 3 aJCC v6; severe dysplasia of the uterine cervix aJCC v6; carcinoma of cervix stage 0; intraepithelial neoplasia of cervix uteri grade 3 aJCC v6; squamous intraepithelial neoplasia, grade III; stage 0 cervical cancer; cervix Severe dysplasia aJCC v6; FIGO stage 0 carcinoma of the cervix; carcinoma in situ of cervix; CIN grade 3 aJCC v6; cervical cancer stage 0 aJCC v6; intraepithelial neoplasia of cervix grade 3 aJCC v6; intraepithelial neoplasia of the uterine cervix grade 3 aJCC v6; FIGO stage 0 carcinoma of cervix; cervix carcinoma in situ aJCC v6; severe dysplasia of the cervix aJCC v6; severe dysplasia of uterine cervix aJCC v6; cervix Ca in situ; FIGO stage 0 cervix carcinoma; severe dysplasia of the cervix uteri; FIGO stage 0 cervix uteri carcinoma"@en ;
oboInOwl:hasRelatedSynonym "cervix uteri carcinoma in situ"@en ,
"uterine cervix carcinoma in situ"@en ;
rdfs:comment "Slightly abnormal cells are found on the surface of the cervix. Cervical squamous intraepithelial neoplasia 1 is usually caused by infection with certain types of human papillomavirus (HPV) and is found when a cervical biopsy is done. Cervical squamous intraepithelial neoplasia 1 is not cancer and usually goes away on its own without treatment, but sometimes it can become cancer and spread into nearby tissue. Cervical squamous intraepithelial neoplasia 1 is sometimes called low-grade or mild dysplasia. Also called CIN 1."@en ;
rdfs:label "Neoplasia Intraepiteliale Squamosa"@it ,
"Squameuze Intra-Epitheliale Neoplasie"@nl ,
"Squamous Intraepithelial Neoplasia"@en ;
ontology:associatedDisease obo:MONDO_0002974 ;
ontology:hasSemanticArea obo:NCIT_C15220 .
### http://purl.obolibrary.org/obo/MP_0011748
obo:MP_0011748 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:IntestinalAbnormality ;
terms:conformsTo ;
oboInOwl:hasExactSynonym "intestinal synechia; intestinal adhesions" ;
rdfs:comment "Formation of fibrous tissue in any part of the intestine as a result of repair or a reactive process." ;
rdfs:label "Fibrosi Intestinale"@it ,
"Intestinal Fibrosis"@en ,
"Intestinale Fibrose"@nl ;
ontology:associatedDisease obo:MONDO_0005130 ;
ontology:associatedKeywordInDiagnosis "fibrosi"@it ;
ontology:hasSemanticArea obo:NCIT_C15220 .
### http://purl.obolibrary.org/obo/NCIT_C113483
obo:NCIT_C113483 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:IntestinalAbnormality ;
terms:conformsTo ;
rdfs:comment "Inadequate absorption of nutrients in the small intestine. [Definition Source: NCI]"@en ;
rdfs:label "Malabsorptie"@nl ,
"Malabsorption"@en ,
"Malassorbimento"@it ;
ontology:associatedDisease obo:MONDO_0005130 ;
ontology:associatedKeywordInDiagnosis "malassorbimento" ;
ontology:hasSemanticArea obo:NCIT_C15220 .
### http://purl.obolibrary.org/obo/NCIT_C12284
obo:NCIT_C12284 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:LungAnatomicalEntity ;
skos:broaderTransitive obo:UBERON_0002185 ;
terms:conformsTo ;
oboInOwl:hasExactSynonym "Mainstem bronchus; Main Bronchus" ;
rdfs:comment "The left and right main bronchi considered as a group."@en ;
rdfs:label "Belangrijkste Bronchus"@nl ,
"Bronco Principale"@it ,
"Main Bronchus"@en ;
ontology:associatedDisease obo:MONDO_0008903 ;
ontology:hasSemanticArea obo:NCIT_C13717 .
### http://purl.obolibrary.org/obo/NCIT_C12313
obo:NCIT_C12313 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:CervixAnatomicalEntity ;
skos:broaderTransitive obo:NCIT_C13166 ;
obo:NCIT_P325 "MSH: The mucous membrane lining of the uterine cavity that is hormonally responsive during the MENSTRUAL CYCLE and PREGNANCY. The endometrium undergoes cyclic changes that characterize MENSTRUATION. After successful FERTILIZATION, it serves to sustain the developing embryo.,CSP: tissue lining the uterus, it is sloughed off during the woman's menstrual period, and afterward grows back and slowly gets thicker and thicker until the next period.,NCI: The layer of tissue that lines the uterus.,NCI: The endometrium, or tunica mucosa, is the mucous membrane comprising the inner layer of the uterine wall; it consists of a simple columnar epithelium and a lamina propria that contains simple tubular uterine glands. The structure, thickness, and state of the endometrium undergo marked change with the menstrual cycle.,NCI: The mucous membrane comprising the inner layer of the uterine wall; it consists of a simple columnar epithelium and a lamina propria that contains simple tubular uterine glands. The structure, thicknes"@en ,
"The layer of tissue that lines the uterus.; The mucous membrane comprising the inner layer of the uterine wall."@en ;
terms:conformsTo ,
;
rdfs:comment "The mucous membrane comprising the inner layer of the uterine wall; it consists of a simple columnar epithelium and a lamina propria that contains simple tubular uterine glands. The structure, thickness, and state of the endometrium undergo marked change with the menstrual cycle. [Definition Source: NCI]"@en ;
rdfs:label "Baarmoederslijmvlies"@nl ,
"Endometrio"@it ,
"Endometrium"@en ;
rdfs:seeAlso obo:UBERON_0001295 ;
ontology:associatedDisease obo:MONDO_0002974 ;
ontology:hasSNOMEDCode "M793100" ;
ontology:hasSemanticArea obo:NCIT_C13717 .
### http://purl.obolibrary.org/obo/NCIT_C12529
obo:NCIT_C12529 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:CeliacDiseaseFinding ;
terms:conformsTo ;
rdfs:comment "Blood cells that are devoid of hemoglobin, capable of ameboid motion and phagocytosis, and act as the principal components of the immune system. [Definition Source: NCI]"@en ;
rdfs:label "Leucocita"@it ,
"Leukocyt"@nl ,
"Leukocyte"@en ;
ontology:associatedDisease obo:MONDO_0005130 ;
ontology:associatedKeywordInDiagnosis "\"leucocitario\"" ;
ontology:hasSemanticArea obo:NCIT_C15220 .
### http://purl.obolibrary.org/obo/NCIT_C12530
obo:NCIT_C12530 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:CeliacDiseaseFinding ;
terms:conformsTo ;
oboInOwl:hasExactSynonym "polymorphonuclear leukocyte; granular leucocyte; granular leukocyte"@en ;
rdfs:comment "A type of leukocyte with a multilobed nucleus and cytoplasmic granules. The unique morphology of the nucleus has led to their also being known as polymorphonuclear leukocytes (PMLs or PMNs). Granulocytes are subdivided according to the staining properties of their granules into eosinophils (red with acidic dye), basophils (blue with basic dye), and neutrophils (not amenable to staining with either acidic or basic dyes). [Definition Source: NCI]"@en ;
rdfs:label "Granulocita"@it ,
"Granulocyte"@en ,
"Granulocyte"@nl ;
ontology:associatedDisease obo:MONDO_0005130 ;
ontology:associatedKeywordInDiagnosis "“infiltrato” + “granulociti”/“granulocitario\""@en ;
ontology:hasSemanticArea obo:NCIT_C15220 .
### http://purl.obolibrary.org/obo/NCIT_C12532
obo:NCIT_C12532 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:CeliacDiseaseFinding ;
skos:broaderTransitive obo:NCIT_C12529 ,
obo:NCIT_C12530 ;
terms:conformsTo ;
rdfs:comment "Granular leukocytes with a nucleus that usually has two lobes connected by a slender thread of chromatin, and cytoplasm containing coarse, round granules that are uniform in size and stainable by eosin. [Definition Source: NCI]"@en ;
rdfs:label "Eosinofiel"@nl ,
"Eosinofilo"@it ,
"Eosinophil"@en ;
ontology:associatedDisease obo:MONDO_0005130 ;
ontology:associatedKeywordInDiagnosis "eosinofili, eosinofilo" ;
ontology:hasSemanticArea obo:NCIT_C15220 .
### http://purl.obolibrary.org/obo/NCIT_C12533
obo:NCIT_C12533 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:CeliacDiseaseFinding ;
skos:broaderTransitive obo:NCIT_C12529 ,
obo:NCIT_C12530 ;
terms:conformsTo ;
rdfs:comment "Granular leukocytes having a nucleus with three to five lobes connected by slender threads of chromatin, and cytoplasm containing fine inconspicuous granules and stainable by neutral dyes. [Definition Source: NCI]"@en ;
rdfs:label "Neutrofiel"@nl ,
"Neutrofilo"@it ,
"Neutrophil"@en ;
ontology:associatedDisease obo:MONDO_0005130 ;
ontology:associatedKeywordInDiagnosis "neutrofilo" ;
ontology:hasSemanticArea obo:NCIT_C15220 .
### http://purl.obolibrary.org/obo/NCIT_C12535
obo:NCIT_C12535 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:CeliacDiseaseFinding ;
terms:conformsTo ;
rdfs:comment "White blood cells formed in the body's lymphoid tissue. The nucleus is round or ovoid with coarse, irregularly clumped chromatin while the cytoplasm is typically pale blue with azurophilic (if any) granules. Most lymphocytes can be classified as either T or B (with subpopulations of each); those with characteristics of neither major class are called null cells. [Definition Source: NCI]"@en ;
rdfs:label "Linfocita"@it ,
"Lymfocyt"@nl ,
"Lymphocyte"@en ;
ontology:associatedDisease obo:MONDO_0005130 ;
ontology:associatedKeywordInDiagnosis "“infiltrato” + “linfociti”/“linfocitario\""@en ;
ontology:hasSemanticArea obo:NCIT_C15220 .
### http://purl.obolibrary.org/obo/NCIT_C12585
obo:NCIT_C12585 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:CeliacDiseaseFinding ;
terms:conformsTo ;
rdfs:comment "A type of epithelial cell that lines the intestines and colon. It participates in the absorption of water and nutrients from the intestinal lumen, and in the secretion of digestive enzymes. [Definition Source: NCI]"@en ;
rdfs:label "Enterocita"@it ,
"Enterocyt"@nl ,
"Enterocyte"@en ;
ontology:associatedDisease obo:MONDO_0005130 ;
ontology:associatedKeywordInDiagnosis "enterociti" ;
ontology:hasSemanticArea obo:NCIT_C15220 .
### http://purl.obolibrary.org/obo/NCIT_C13166
obo:NCIT_C13166 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:CervixAnatomicalEntity ;
obo:NCIT_P325 "The moist, inner lining of some organs and body cavities (such as the nose, mouth, lungs, and stomach). Glands in the mucosa make mucus (a thick, slippery fluid)."@en ;
terms:conformsTo ;
oboInOwl:hasExactSynonym "Mucosal; MUCOSA; Mucous Membrane; mucous membrane; Mucosa; mucosa"@en ;
rdfs:comment "The moist, inner lining of some organs and body cavities (such as the nose, mouth, lungs, and stomach). Glands in the mucosa make mucus (a thick, slippery fluid). [Definition Source: NCI]"@en ;
rdfs:label "Mucosa"@en ,
"Mucosa"@it ,
"Slijmvlies"@nl ;
ontology:associatedDisease obo:MONDO_0002974 ;
ontology:hasSemanticArea obo:NCIT_C13717 .
### http://purl.obolibrary.org/obo/NCIT_C135565
obo:NCIT_C135565 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:IntestinalAbnormality ;
obo:NCIT_P106 "Pathologic Function" ;
terms:conformsTo ;
rdfs:comment "A rare hyperplastic lesion of Brunner's gland in the duodenum. Although it is usually asymptomatic and discovered incidentally during upper gastrointestinal endoscopy, it may cause hemorrhage. [Definition Source: NCI]"@en ;
rdfs:label "Brunner's Gland Hyperplasia"@en ,
"Hyperplasie van de Klier van Brunner"@nl ,
"Iperplasia della Ghiandola di Brunner"@it ;
ontology:associatedDisease obo:MONDO_0005130 ;
ontology:associatedKeywordInDiagnosis "“Brunner” + “iperplasia” + “ghiandole”"@it ;
ontology:definition "Usually hyperplasia of Brunner’s glands. NB: the mere Presence of Brunner’s glands is not automatically an hyperplasia. Rather, hyperplasia Is something the glands may have or not. If they have it, it may be a problem"@en ;
ontology:hasSemanticArea obo:NCIT_C15220 .
### http://purl.obolibrary.org/obo/NCIT_C13717
obo:NCIT_C13717 rdf:type owl:NamedIndividual ,
ontology:SemanticArea ;
terms:conformsTo ;
oboInOwl:hasExactSynonym "Location; Anatomic Site"@en ;
rdfs:label "Anatomical Location"@en ,
"Anatomische Locatie"@nl ,
"Posizione Anatomica"@it ;
ontology:definition "Named locations of or within the body. [Definition Source: NCI]"@en .
### http://purl.obolibrary.org/obo/NCIT_C15220
obo:NCIT_C15220 rdf:type owl:NamedIndividual ,
ontology:SemanticArea ;
terms:conformsTo ;
rdfs:comment "The investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. [Definition Source: NCI]"@en ;
rdfs:label "Diagnose"@nl ,
"Diagnosi"@it ,
"Diagnosis"@en .
### http://purl.obolibrary.org/obo/NCIT_C15256
obo:NCIT_C15256 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:CervixSurgeryType ;
obo:NCIT_P325 "Surgery to remove the uterus and, sometimes, the cervix. When the uterus and the cervix are removed, it is called a total hysterectomy. When only the uterus is removed, it is called a partial hysterectomy." ;
terms:conformsTo ;
rdfs:comment "A surgical procedure to remove the uterine body (partial hysterectomy) or the uterine body and cervix (total hysterectomy). [Definition Source: NCI]"@en ;
rdfs:label "Hysterectomie"@nl ,
"Hysterectomy"@en ,
"Isterectomia"@it ;
ontology:associatedDisease obo:MONDO_0002974 ;
ontology:hasSemanticArea ontology:procedure .
### http://purl.obolibrary.org/obo/NCIT_C15389
obo:NCIT_C15389 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:CeliacInterventionType ,
ontology:ColonInterventionType ;
obo:NCIT_P106 "Diagnostic Procedure" ;
terms:conformsTo ;
oboInOwl:hasExactSynonym "Endoscopy and Biopsy; Endoscopic Biopsy"@en ;
rdfs:comment "The removal of tissue specimens or fluid from the living body for microscopic examination, performed to establish a diagnosis. In the case of an endoscopic biopsy, an endoscope is used to obtain the sample. [Definition Source: NCI]"@en ;
rdfs:label "Biopsia Endoscopica"@it ,
"Endoscopic Biopsy"@en ,
"Endoscopische Biopsie"@nl ;
ontology:associatedDisease obo:MONDO_0002032 ,
obo:MONDO_0005130 ;
ontology:hasSNOMEDCode "P410000" ;
ontology:hasSemanticArea ontology:procedure ;
ontology:internalNotes "previous SNOMED P41" .
### http://purl.obolibrary.org/obo/NCIT_C15402
obo:NCIT_C15402 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:CervixSurgeryType ;
terms:conformsTo ;
oboInOwl:hasExactSynonym "cone biopsy; LEEP" ;
oboInOwl:hasRelatedSynonym "Bx; BIOPSY; biopsy; Biopsy" ;
rdfs:comment "Surgical removal of a cone-shaped portion of tissue from the uterine cervix. [Definition Source: NCI]"@en ;
rdfs:label "Conization"@en ,
"Conization"@nl ,
"Conizzazione"@it ;
ontology:associatedDisease obo:MONDO_0002974 ;
ontology:hasSemanticArea ontology:procedure .
### http://purl.obolibrary.org/obo/NCIT_C15403
obo:NCIT_C15403 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:CervixSurgeryType ;
obo:NCIT_P106 "Diagnostic Procedure" ;
obo:NCIT_P325 "A procedure in which the mucous membrane of the cervical canal is scraped using a spoon-shaped instrument called a curette." ;
terms:conformsTo ;
rdfs:comment "A procedure in which the mucous membrane of the cervical canal is scraped using a curette. [Definition Source: NCI]"@en ;
rdfs:label "Curettage Endocervicale"@it ,
"Endocervical Curettage"@en ,
"Endocervicale Curettage"@nl ;
ontology:associatedDisease obo:MONDO_0002974 ;
ontology:hasSemanticArea ontology:procedure .
### http://purl.obolibrary.org/obo/NCIT_C156083
obo:NCIT_C156083 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:Dysplasia ;
obo:NCIT_P106 "Finding"@en ;
terms:conformsTo ;
rdfs:comment "A subjective characterization of the phenomenon of dysplasia, based on microscopic examination of the architectural and/or cytological changes in a tissue sample, that is determined to be high. [Definition Source: NCI]"@en ;
rdfs:label "Displasia di Alto Grado"@it ,
"High Grade Dysplasia"@en ,
"Hoogwaardige Dysplasie"@nl ;
ontology:associatedDisease obo:MONDO_0002032 ;
ontology:hasSemanticArea obo:NCIT_C15220 .
### http://purl.obolibrary.org/obo/NCIT_C15609
obo:NCIT_C15609 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:ColonSurgeryType ;
obo:NCIT_P106 "Therapeutic or Preventive Procedure" ;
obo:NCIT_P325 "A procedure to connect healthy sections of tubular structures in the body after the diseased portion has been surgically removed.; A natural or surgically-induced connection between tubular structures in the body." ;
terms:conformsTo ;
rdfs:comment "A natural or surgically-induced connection between tubular structures in the body. [Definition Source: NCI]"@en ;
rdfs:label "Anastomose"@nl ,
"Anastomosi"@it ,
"Anastomosis"@en ;
ontology:associatedDisease obo:MONDO_0002032 ;
ontology:hasSNOMEDCode "M182000" ;
ontology:hasSemanticArea ontology:procedure ;
ontology:internalNotes "previous snomed was M18200" .
### http://purl.obolibrary.org/obo/NCIT_C158758
obo:NCIT_C158758 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:ColonSurgeryType ;
terms:conformsTo ;
oboInOwl:hasExactSynonym "Removal Technique; Resection; Surgical Resection"@en ;
rdfs:comment "A surgical procedure in which tissue is removed from the body. [Definition Source: NCI]"@en ;
rdfs:label "Resectie"@nl ,
"Resection"@en ,
"Resezione"@it ;
ontology:associatedDisease obo:MONDO_0002032 ;
ontology:hasSNOMEDCode "P110000" ;
ontology:hasSemanticArea ontology:procedure ;
ontology:internalNotes "previous SNOMED was P11000" .
### http://purl.obolibrary.org/obo/NCIT_C160819
obo:NCIT_C160819 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:ColonPOType ;
skos:broaderTransitive obo:NCIT_C4124 ,
obo:NCIT_C4349 ;
terms:conformsTo ;
rdfs:comment "An adenocarcinoma that arises from the colon and has metastasized to another anatomic site. [Definition Source: NCI]"@en ;
rdfs:label "Adenocarcinoma Metastatico del Colon"@it ,
"Gemetastaseerd Colon Adenocarcinoom"@nl ,
"Metastatic Colon Adenocarcinoma"@en ;
ontology:associatedDisease obo:MONDO_0002032 ;
ontology:hasSemanticArea obo:NCIT_C15220 .
### http://purl.obolibrary.org/obo/NCIT_C16576
obo:NCIT_C16576 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:Gender ;
terms:conformsTo ;
oboInOwl:hasExactSynonym "Female Gender, Self Reported; Female Gender, Self Report; Female; Female Gender"@en ;
rdfs:comment "A person who belongs to the sex that normally produces ova. The term is used to indicate biological sex distinctions, or cultural gender role distinctions, or both. [Definition Source: NCI]"@en ;
rdfs:label "Female Gender"@en ,
"Genere Femminile"@it ,
"Vrouwlijk Geslacht"@nl ;
ontology:hasSemanticArea ontology:general .
### http://purl.obolibrary.org/obo/NCIT_C174450
obo:NCIT_C174450 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:IntestinalAbnormality ;
skos:broaderTransitive obo:NCIT_C3137 ;
terms:conformsTo ;
rdfs:comment "An inflammatory process characterized by the presence of lymphocytes and plasma cells and the absence of polymorphonuclear neutrophils. [Definition Source: NCI]"@en ;
rdfs:label "Chronic Inflammation"@en ,
"Chronische Ontsteking"@nl ,
"Infiammazione Cronica"@it ;
ontology:associatedDisease obo:MONDO_0005130 ;
ontology:associatedKeywordInDiagnosis "flogosi cronica, flogosi cronica non attiva" ;
ontology:hasSemanticArea obo:NCIT_C15220 .
### http://purl.obolibrary.org/obo/NCIT_C19151
obo:NCIT_C19151 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:LungCarcinomaFinding ;
terms:conformsTo ;
rdfs:comment "The spread of cancer from one part of the body to another. A tumor formed by cells that have spread is called a \"metastatic tumor\" or a \"metastasis.\" The metastatic tumor contains cells that are like those in the original (primary) tumor. [Definition Source: NCI]"@en ;
rdfs:label "Metastase"@nl ,
"Metastasi"@it ,
"Metastasis"@en ;
ontology:associatedDisease obo:MONDO_0008903 ;
ontology:hasSemanticArea obo:NCIT_C15220 .
### http://purl.obolibrary.org/obo/NCIT_C20197
obo:NCIT_C20197 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:Gender ;
obo:NCIT_P106 "Qualitative Concept"@en ;
terms:conformsTo ;
oboInOwl:hasExactSynonym "Male Gender, Self Report; Male; Male Gender; Male Gender, Self Reported"@en ;
rdfs:comment "A person who belongs to the sex that normally produces sperm. The term is used to indicate biological sex distinctions, cultural gender role distinctions, or both. [Definition Source: NCI]"@en ;
rdfs:label "Genere Maschile"@it ,
"Male Gender"@en ,
"Mannelijk Geslacht"@nl ;
ontology:hasSemanticArea ontology:general .
### http://purl.obolibrary.org/obo/NCIT_C25349
obo:NCIT_C25349 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:ColonSurgeryType ;
skos:broaderTransitive obo:NCIT_C51678 ;
terms:conformsTo ;
oboInOwl:hasExactSynonym "Polypectomy"@en ;
rdfs:comment "Complete or partial removal of a polypoid lesion from the mucosal surface. [Definition Source: NCI]"@en ;
rdfs:label "Polipectomia"@it ,
"Polypectomie"@nl ,
"Polypectomy"@en ;
ontology:annotatedRule "Presence of jeyword \"polipectomia\" in \"Materiali\""@en ;
ontology:associatedDisease obo:MONDO_0002032 ;
ontology:hasSemanticArea ontology:procedure ,
"Complete or partial removal of a polypoid lesion from the mucosal surface."@en .
### http://purl.obolibrary.org/obo/NCIT_C26716
obo:NCIT_C26716 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:CervixPOType ;
obo:NCIT_P106 "Disease or Syndrome"@en ;
terms:conformsTo ,
;
oboInOwl:hasExactSynonym "Cervicitis"@en ;
rdfs:comment "An acute or chronic inflammatory process that affects the cervix. Causes include sexually transmitted diseases and bacterial infections. Clinical manifestations include abnormal vaginal bleeding and vaginal discharge. [Definition Source: NCI]"@en ;
rdfs:label "Cervicite"@it ,
"Cervicitis"@en ,
"Cervicitis"@nl ;
ontology:associatedDisease obo:MONDO_0002974 ;
ontology:hasSNOMEDCode "M400000" ,
"M430000" ;
ontology:hasSemanticArea obo:NCIT_C15220 ;
ontology:internalNotes "Previously, this class presented SNOMED coded M40000 and M30000*"@en .
### http://purl.obolibrary.org/obo/NCIT_C26723
obo:NCIT_C26723 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:ColonPOType ;
terms:conformsTo ;
oboInOwl:hasExactSynonym "Lymphadenitis; colitis; colon inflammation; inflammation of colon"@en ;
rdfs:comment "Inflammation of the colon. [Defintion Source: NCI]"@en ;
rdfs:label "Colite"@it ,
"Colitis"@en ,
"Colitis"@nl ;
ontology:associatedDisease obo:MONDO_0002032 ;
ontology:hasSNOMEDCode "M400000" ,
"M400700" ;
ontology:hasSemanticArea obo:NCIT_C15220 ;
ontology:internalNotes "previously it had snomed codes M40000 and M40070"@en .
### http://purl.obolibrary.org/obo/NCIT_C27057
obo:NCIT_C27057 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:CervixPOType ;
skos:broaderTransitive obo:NCIT_C26716 ;
terms:conformsTo ;
rdfs:comment "Chronic inflammation of the cervix. [Definition Source: NCI]"@en ;
rdfs:label "Cervicite Cronica"@it ,
"Chronic Cervicitis"@en ,
"Chronische Cervicitis"@nl ;
ontology:associatedDisease obo:MONDO_0002974 ;
ontology:hasSemanticArea obo:NCIT_C15220 .
### http://purl.obolibrary.org/obo/NCIT_C2852
obo:NCIT_C2852 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:ColonPOType ;
terms:conformsTo ;
rdfs:comment "A common cancer characterized by the presence of malignant glandular cells. Morphologically, adenocarcinomas are classified according to the growth pattern (e.g., papillary, alveolar) or according to the secreting product (e.g., mucinous, serous). Representative examples of adenocarcinoma are ductal and lobular breast carcinoma, lung adenocarcinoma, renal cell carcinoma, hepatocellular carcinoma (hepatoma), colon adenocarcinoma, and prostate adenocarcinoma. [Definition Source: NCI]"@en ;
rdfs:label "Adenocarcinoma"@en ,
"Adenocarcinoma"@it ,
"adenocarcinoom"@nl ;
ontology:hasSemanticArea obo:NCIT_C15220 .
### http://purl.obolibrary.org/obo/NCIT_C2960
obo:NCIT_C2960 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:CervixPOType ;
obo:NCIT_P325 "A raised growth on the surface of the genitals caused by human papillomavirus (HPV) infection. The HPV in genital warts is very contagious and can be spread by skin-to-skin contact, usually during oral, anal, or genital sex with an infected partner.; A wart of the perianal region or genitalia that is caused by sexual transmission of the human papillomavirus."@en ;
terms:conformsTo ;
oboInOwl:hasExactSynonym "genital wart; condyloma; Genital Warts; Condyloma Acuminatum; Condyloma Acuminata; Genital Wart; Condyloma; Venereal Wart"@en ;
rdfs:comment "A sexually transmitted papillary growth caused by the human papillomavirus. It usually arises in the skin and mucous membranes of the perianal region and external genitalia. [Definition Source: NCI]"@en ;
rdfs:label "Condiloma"@it ,
"Condyloma"@en ,
"Condyloma"@nl ;
ontology:associatedDisease obo:MONDO_0002974 ;
ontology:hasSNOMEDCode "M767000" ;
ontology:hasSemanticArea obo:NCIT_C15220 ;
ontology:internalNotes "previous SNOMED was M76700"@en .
### http://purl.obolibrary.org/obo/NCIT_C2965
obo:NCIT_C2965 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:IntestinalAbnormality ;
terms:conformsTo ;
rdfs:comment "A gastrointestinal disorder characterized by chronic inflammation involving all layers of the intestinal wall, noncaseating granulomas affecting the intestinal wall and regional lymph nodes, and transmural fibrosis. Crohn disease most commonly involves the terminal ileum; the colon is the second most common site of involvement. [Definition Source: NCI]"@en ;
rdfs:label "Crohn Disease"@en ,
"Morbo di Crohn"@it ,
"Ziekte van Crohn"@nl ;
ontology:associatedDisease obo:MONDO_0005130 ;
ontology:associatedKeywordInDiagnosis "Crohn" ;
ontology:hasSemanticArea obo:NCIT_C15220 .
### http://purl.obolibrary.org/obo/NCIT_C3002
obo:NCIT_C3002 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:IntestinalAbnormality ;
terms:conformsTo ;
rdfs:comment "Accumulation of an excessive amount of fluid in cells or intercellular tissues. [Definition Source: NCI]"@en ;
rdfs:label "Edema"@en ,
"Edema"@it ,
"Oedeem"@nl ;
ontology:associatedDisease obo:MONDO_0005130 ;
ontology:associatedKeywordInDiagnosis "Edema"@it ;
ontology:hasSemanticArea obo:NCIT_C15220 .
### http://purl.obolibrary.org/obo/NCIT_C3064
obo:NCIT_C3064 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:ColonPOType ;
terms:conformsTo ;
rdfs:comment "An inflammation AE that shows localized nodular inflammation found in tissues."@en ;
rdfs:label "Granuloma"@en ,
"Granuloma"@it ,
"Granuloom"@nl ;
rdfs:seeAlso obo:NCIT_C3064 ,
obo:OAE_0001850 ;
ontology:associatedDisease obo:MONDO_0002032 ;
ontology:hasSNOMEDCode "M440000" ;
ontology:hasSemanticArea obo:NCIT_C15220 ;
ontology:internalNotes "old SNOMED M44000"@en .
### http://purl.obolibrary.org/obo/NCIT_C3137
obo:NCIT_C3137 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:IntestinalAbnormality ;
terms:conformsTo ;
rdfs:comment "A finding of a localized protective response resulting from injury or destruction of tissues. Inflammation serves to destroy, dilute, or wall off both the injurious agent and the injured tissue. In the acute phase, inflammation is characterized by the signs of pain, heat, redness, swelling, and loss of function. Histologically, inflammation involves a complex series of events, including dilatation of arterioles, capillaries, and venules, with increased permeability and blood flow; exudation of fluids, including plasma proteins; and leukocyte migration into the site of inflammation. [Definition Source: NCI]"@en ;
rdfs:label "Infiammazione"@it ,
"Inflammation"@en ,
"Ontsteking"@nl ;
ontology:associatedDisease obo:MONDO_0005130 ;
ontology:associatedKeywordInDiagnosis "flogosi" ;
ontology:hasSemanticArea obo:NCIT_C15220 .
### http://purl.obolibrary.org/obo/NCIT_C3236
obo:NCIT_C3236 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:CervixPOType ;
obo:NCIT_P325 "Conversion of a mature, normal cell or groups of mature cells to other forms of mature cells.; A change of cells to a form that does not normally occur in the tissue in which it is found."@en ;
terms:conformsTo ;
oboInOwl:hasExactSynonym "Metaplasia; METAPLASIA; Metaplastic Change; metaplasia"@en ;
rdfs:comment "Transformation of a mature, normal cell or groups of mature cells to other forms of mature cells. The capacity for malignant transformation of metaplastic cells is a subject of controversy. [Definition Source: NCI]"@en ;
rdfs:label "Metaplasia"@en ,
"Metaplasia"@it ,
"Metaplasie"@nl ;
ontology:associatedDisease obo:MONDO_0002974 ;
ontology:definition "MSH: A condition in which there is a change of one adult cell type to another similar adult cell type.,CSP: transformation of a normal to a similar but abnormal mature cell type.,NCI: A change of cells to a form that does not normally occur in the tissue in which it is found.,CHV: a change in the type of cells in a tissue to a form that is not normal for that tissue,CHV: a change in the type of cells in a tissue to a form that is not normal for that tissue,NCI: Transformation of a mature, normal cell or groups of mature cells to other forms of mature cells. The capacity for malignant transformation of metaplastic cells is a subject of controversy."@en ;
ontology:hasSNOMEDCode "M730000" ;
ontology:hasSemanticArea obo:NCIT_C15220 .
### http://purl.obolibrary.org/obo/NCIT_C3237
obo:NCIT_C3237 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:CervixPOType ;
skos:broaderTransitive obo:NCIT_C3236 ;
terms:conformsTo ;
rdfs:comment "A morphologic finding indicating the transformation of glandular or transitional epithelial cells to, usually, mature squamous epithelial cells. Representative examples include squamous metaplasia of bronchial epithelium, cervix, urinary bladder, and prostate gland. [Definition Source: NCI]"@en ;
rdfs:label "Metaplasia Squamosa"@it ,
"Plaveiselcelmetaplasie"@nl ,
"Squamous Metaplasia"@en ;
ontology:associatedDisease obo:MONDO_0002974 ;
ontology:hasSNOMEDCode "M732200" ;
ontology:hasSemanticArea obo:NCIT_C15220 .
### http://purl.obolibrary.org/obo/NCIT_C32918
obo:NCIT_C32918 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:CervixAnatomicalEntity ;
skos:broaderTransitive obo:NCIT_C13166 ;
terms:conformsTo ;
oboInOwl:hasExactSynonym "cassock"@en ;
rdfs:comment "The connective tissue coat of a mucous membrane including the epithelium and basement membrane. [Definition Source: NCI]"@en ;
rdfs:label "Lamina Propria"@en ,
"Lamina Propria"@it ,
"Lamina Propria"@nl ;
ontology:associatedDisease obo:MONDO_0002974 ;
ontology:definition "A type of connective tissue found under the thin layer of tissues covering a mucous membrane.,NCI: The connective tissue coat of a mucous membrane including the epithelium and basement membrane. [Definition Source: NCI]"@en ;
ontology:hasSemanticArea obo:NCIT_C13717 .
### http://purl.obolibrary.org/obo/NCIT_C32968
obo:NCIT_C32968 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:LungAnatomicalEntity ;
skos:broaderTransitive obo:NCIT_C12284 ;
terms:conformsTo ;
oboInOwl:hasExactSynonym "MAIN BRONCHUS, LEFT; Left Main Bronchus" ;
rdfs:comment "One of the two main bronchi. It is narrower but longer than the right main bronchus and connects to the left lung. [Definition Source: NCI]"@en ;
rdfs:label "Bronco Principale Sinistro"@it ,
"Left Main Bronchus"@en ,
"Linker Hoofdbronchus"@nl ;
ontology:associatedDisease obo:MONDO_0008903 ;
ontology:hasSemanticArea obo:NCIT_C13717 .
### http://purl.obolibrary.org/obo/NCIT_C32998
obo:NCIT_C32998 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:LungAnatomicalEntity ;
skos:broaderTransitive obo:UBERON_0002185 ;
terms:conformsTo ;
oboInOwl:hasExactSynonym "Lobar Bronchus; Secondary Bronchus" ;
rdfs:comment "A part the bronchial tree, arising from the primary bronchi, with each one serving as the airway to a specific lobe of the lung. [Definition Source: NCI]" ;
rdfs:label "Bronco Lobare"@it ,
"Lobaire Bronchus"@nl ,
"Lobar Bronchus"@en ;
ontology:associatedDisease obo:MONDO_0008903 ;
ontology:hasSemanticArea obo:NCIT_C13717 .
### http://purl.obolibrary.org/obo/NCIT_C33486
obo:NCIT_C33486 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:LungAnatomicalEntity ;
skos:broaderTransitive obo:NCIT_C12284 ;
terms:conformsTo ;
oboInOwl:hasExactSynonym "Right Main Bronchus; MAIN BRONCHUS, RIGHT" ;
rdfs:comment "One of the two main bronchi. It is wider but shorter than the left main bronchus and connects to the right lung. [Definition Source: NCI]"@en ;
rdfs:label "Bronco Principale Destro"@it ,
"Rechter Hoofdbronchus"@nl ,
"Right Main Bronchus"@en ;
ontology:associatedDisease obo:MONDO_0008903 ;
ontology:hasSemanticArea obo:NCIT_C13717 .
### http://purl.obolibrary.org/obo/NCIT_C33554
obo:NCIT_C33554 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:CervixAnatomicalEntity ;
skos:related obo:BTO_0002073 ;
terms:conformsTo ;
oboInOwl:hasExactSynonym "Simple Epithelium"@en ,
"Unilaminar epithelium"@en ;
rdfs:comment "Epithelium composed of a single layer of cells attached to a basement membrane. [Definition Source: NCI]"@en ;
rdfs:label "Eenlagig Epitheel"@nl ,
"Epitelio Semplice"@it ,
"Simple Epithelium"@en ;
ontology:associatedDisease obo:MONDO_0002974 ;
ontology:hasSemanticArea obo:NCIT_C13717 .
### http://purl.obolibrary.org/obo/NCIT_C3426
obo:NCIT_C3426 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:ColonPOType ,
ontology:IntestinalAbnormality ;
obo:NCIT_P325 "A circumscribed loss of integrity of the skin or mucous membrane.; Destruction of an epithelial surface extending into or beyond the basement membrane."@en ;
terms:conformsTo ;
oboInOwl:hasExactSynonym "Ulcerative Inflammation; Ulcer; Ulceration; Ulcers; Ulcerated; ulcer; ULCER; Ulcerative"@en ;
rdfs:comment "A circumscribed inflammatory and often suppurating lesion on the skin or an internal mucous surface resulting in necrosis of tissue. [Definition Source: NCI]"@en ;
rdfs:label "Ulcer"@en ,
"Ulcera"@it ,
"Zweer"@nl ;
ontology:associatedDisease obo:MONDO_0002032 ,
obo:MONDO_0005130 ;
ontology:associatedKeywordInDiagnosis "ulcerativa, ulcerata" ;
ontology:hasSNOMEDCode "400300" ;
ontology:hasSemanticArea obo:NCIT_C15220 ;
ontology:internalNotes "previous SNOMED was M40030"@en .
### http://purl.obolibrary.org/obo/NCIT_C35265
obo:NCIT_C35265 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:CervixPOType ;
terms:conformsTo ;
rdfs:comment "Diffuse hypertrophy of the stratum spinosum layer of the epidermis. [Definition Source: NCI]"@en ;
rdfs:label "Acanthosis"@en ,
"Acanthosis"@nl ,
"Acantosi"@it ;
ontology:associatedDisease obo:MONDO_0002974 ;
ontology:hasSNOMEDCode "G000900" ,
"M727100" ;
ontology:hasSemanticArea obo:NCIT_C15220 ;
ontology:internalNotes "previous SNOMED G0009"@en .
### http://purl.obolibrary.org/obo/NCIT_C35541
obo:NCIT_C35541 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:CervixPOType ;
obo:NCIT_P325 "Thickening of the outermost layer of stratified squamous epithelium.; A condition marked by thickening of the outer layer of the skin, which is made of keratin (a tough, protective protein). It can result from normal use (corns, calluses), chronic inflammation (eczema), or genetic disorders (X-linked ichthyosis, ichthyosis vulgaris)."@en ;
terms:conformsTo ;
rdfs:comment "Hypertrophy of the outermost layer of the epidermis. It may be caused by physical or chemical irritants, irradiation, infection, or neoplastic processes. [Definition Source: NCI]"@en ;
rdfs:label "Hyperkeratose"@nl ,
"Hyperkeratosis"@en ,
"Ipercheratosi"@it ;
ontology:associatedDisease obo:MONDO_0002974 ;
ontology:hasSemanticArea obo:NCIT_C15220 .
### http://purl.obolibrary.org/obo/NCIT_C36808
obo:NCIT_C36808 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:Koilocyte ;
terms:conformsTo ;
oboInOwl:hasExactSynonym "Koilocyte; Koilocytotic Squamous Cell"@en ;
rdfs:comment "Koilocytes are epithelial cells containing a hyperchromatic nucleus that is acentrically displaced by perinuclear vacuole(s), and these morphological alterations are used by pathologists to help identify HPV-infected epithelial cells in Pap smears. [Definition Source: PMID 18688031]"@en ;
rdfs:label "Cellula Squamosa Cilocitotica"@it ,
"Koilocytotic Squamous Cell"@en ,
"Koilocytotische Plaveiselcel"@nl ;
ontology:associatedDisease obo:MONDO_0002974 ;
ontology:hasSemanticArea obo:NCIT_C15220 .
### http://purl.obolibrary.org/obo/NCIT_C40196
obo:NCIT_C40196 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:CervixPOType ;
skos:broaderTransitive obo:MONDO_0022394 ;
terms:conformsTo ;
oboInOwl:hasExactSynonym "Mild Squamous Dysplasia of the Cervix; Low Grade Cervical Squamous Intraepithelial Neoplasia; Low-Grade Cervical SIL; Low-Grade Cervical Squamous Intraepithelial Lesion; Low Grade Cervical Squamous Intraepithelial Lesion; Low-Grade CIN; Cervical Squamous Intraepithelial Neoplasia 1; Low Grade Cervical Squamous Intraepithelial Neoplasia; LSIL; low grade dysplasia; mild dysplasia"@en ;
rdfs:comment "A precancerous neoplastic process that affects the cervical squamous epithelium without evidence of invasion. It is usually associated with human papillomavirus infection. It is characterized by the presence of mild atypia in the superficial epithelial layer that may be associated with koilocytosis. Maturation is present in the upper two thirds of the epithelium. Mitotic figures are not numerous and are present in the basal third of the epithelium. [Definition Source: NCI]"@en ;
rdfs:label "Cervicale Squameuze Intra-Epitheliale Neoplasie Graad 1"@nl ,
"Low Grade Cervical Squamous Intraepithelial Neoplasia"@en ,
"Neoplasia Cervicale Squamosa Intraepiteliale di Grado 1"@it ;
ontology:associatedDisease obo:MONDO_0002974 ;
ontology:hasSNOMEDCode "M740060" ;
ontology:hasSemanticArea obo:NCIT_C15220 ;
ontology:internalNotes "old SNOMED M74006*"@en .
### http://purl.obolibrary.org/obo/NCIT_C40198
obo:NCIT_C40198 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:CervixPOType ;
skos:broaderTransitive obo:MONDO_0006137 ;
terms:conformsTo ;
oboInOwl:hasExactSynonym "CIN 2; Cervical Squamous Intraepithelial Neoplasia 2; Moderate Squamous Dysplasia of the Cervix; cervical squamous intraepithelial neoplasia 2"@en ;
rdfs:comment "Cervical squamous intraepithelial neoplasia characterized by the presence of maturation in the upper half of the squamous epithelium and conspicuous nuclear atypia which is present in all epithelial layers. Mitotic figures are present in the basal two thirds of the epithelium. [Definition Source: NCI]"@en ;
rdfs:label "Cervical Squamous Intraepithelial Neoplasia 2"@en ,
"Cervicale Squameuze Intra-Epitheliale Neoplasie Graad 2"@nl ,
"Neoplasia Cervicale Squamosa Intraepiteliale di Grado 2"@it ;
ontology:associatedDisease obo:MONDO_0002974 ;
ontology:hasSNOMEDCode "M740070" ;
ontology:hasSemanticArea obo:NCIT_C15220 ;
ontology:internalNotes "original SNOMED M74007*"@en .
### http://purl.obolibrary.org/obo/NCIT_C4029
obo:NCIT_C4029 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:CervixPOType ;
skos:broaderTransitive obo:MONDO_0005131 ;
terms:conformsTo ;
oboInOwl:hasExactSynonym "adenocarcinoma of the uterine cervix; uterine cervix adenocarcinoma; adenocarcinoma of cervix; adenocarcinoma of cervix uteri; adenocarcinoma - cervix; cervix adenocarcinoma; adenocarcinoma of the cervix; adenocarcinoma of the cervix uteri; adenocarcinoma cervix uteri; adenocarcinoma of uterine cervix; cervix uteri adenocarcinoma; cervical adenocarcinoma"@en ;
oboInOwl:hasRelatedSynonym "cervical adenocarcinoma, NOS; cervical adenocarcinoma, not otherwise specified"@en ;
rdfs:comment "An adenocarcinoma arising from the cervical epithelium. It accounts for approximately 15% of invasive cervical carcinomas. Increased numbers of sexual partners and human papillomavirus (HPV) infection are risk factors. Grossly, advanced cervical adenocarcinoma may present as an exophytic mass, an ulcerated lesion, or diffuse cervical enlargement. Microscopically, the majority of cervical adenocarcinomas are of the endocervical (mucinous) type. [Definition Source: NCI]"@en ;
rdfs:label "Adenocarcinoma Cervicale"@it ,
"Cervicaal Adenocarcinoom"@nl ,
"Cervical Adenocarcinoma"@en ;
rdfs:seeAlso obo:MONDO_0005153 ;
ontology:associatedDisease obo:MONDO_0002974 ;
ontology:hasSemanticArea obo:NCIT_C15220 .
### http://purl.obolibrary.org/obo/NCIT_C4124
obo:NCIT_C4124 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:ColonPOType ;
skos:broaderTransitive obo:NCIT_C2852 ;
terms:conformsTo ;
oboInOwl:hasExactSynonym "Metastatic Adenocarcinoma"@en ;
rdfs:comment "An adenocarcinoma which has spread from its original site of growth to another anatomic site. [Definition Source: NCI]"@en ;
rdfs:label "Adenocarcinoma Metastatico"@it ,
"Gemetastaseerd Adenocarcinoom"@nl ,
"Metastatic Adenocarcinoma"@en ;
ontology:associatedDisease obo:MONDO_0002032 ;
ontology:hasSNOMEDCode "M80106" ,
"M814060" ;
ontology:hasSemanticArea obo:NCIT_C15220 ;
ontology:internalNotes "old SNOMED M81406"@en .
### http://purl.obolibrary.org/obo/NCIT_C4245
obo:NCIT_C4245 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:LungPOType ;
terms:conformsTo ;
rdfs:comment "A benign, slow-growing tumor arising from the soft tissues usually in the mid-thoracic region of the elderly. It is characterized by the presence of paucicellular collagenous tissue, adipocytes and a predominance of large coarse elastic fibers arranged in globules. [Definition Source: NCI]"@en ;
rdfs:label "Elastofibroma"@en ,
"Elastofibroma"@it ,
"Elastofibroma"@nl ;
ontology:associatedDisease obo:MONDO_0008903 ;
ontology:hasSemanticArea obo:NCIT_C15220 .
### http://purl.obolibrary.org/obo/NCIT_C4349
obo:NCIT_C4349 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:ColonPOType ;
skos:broaderTransitive obo:NCIT_C2852 ;
terms:conformsTo ;
oboInOwl:hasExactSynonym "colonic adenocarcinoma; adenocarcinoma of the colon; colon adenocarcinoma; adenocarcinoma of colon; adenocarcinoma - colon"@en ;
oboInOwl:hasRelatedSynonym "COAD"@en ;
rdfs:comment "An adenocarcinoma arising from the colon. It is more frequently seen in populations with a Western type diet and in patients with a history of chronic inflammatory bowel disease. Signs and symptoms include intestinal bleeding, anemia, and change in bowel habits. According to the degree of cellular differentiation, colonic adenocarcinomas are divided into well, moderately, and poorly differentiated. Histologic variants include mucinous adenocarcinoma, signet ring cell carcinoma, medullary carcinoma, serrated adenocarcinoma, cribriform comedo-type adenocarcinoma, and micropapillary adenocarcinoma. [Definition Source: NCI]"@en ;
rdfs:label "Adenocarcinoma del Colon"@it ,
"Colon Adenocarcinoma"@en ,
"Colon Adenocarcinoom"@nl ;
ontology:associatedDisease obo:MONDO_0002032 ;
ontology:hasSNOMEDCode "M80102" ,
"M814030" ;
ontology:hasSemanticArea obo:NCIT_C15220 .
### http://purl.obolibrary.org/obo/NCIT_C4520
obo:NCIT_C4520 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:CervixPOType ;
skos:broaderTransitive obo:NCIT_C4029 ;
obo:NCIT_P106 "Neoplastic Process"@en ;
terms:conformsTo ;
oboInOwl:hasExactSynonym "Uterine Cervix Adenocarcinoma in situ; Adenocarcinoma in situ of the Uterine Cervix; Cervix Uteri Adenocarcinoma in situ; Adenocarcinoma in situ of Uterine Cervix; Cervical Adenocarcinoma In Situ AJCC v7; Adenocarcinoma in situ of the Cervix; Cervix Adenocarcinoma in situ; Adenocarcinoma in situ of Cervix Uteri; Adenocarcinoma in situ of Cervix; Adenocarcinoma in situ of the Cervix Uteri; Cervical Adenocarcinoma In Situ"@en ;
rdfs:comment "Adenocarcinoma in situ (AIS) represents a pre-cancerous condition that can progress to cervical adenocarcinoma. Cervical adenocarcinoma in situ occurs in the glandular tissue of the cervix and is the condition which leads to invasive adenocarcinoma. [Definition Source: NCI]"@en ;
rdfs:label "Adenocarcinoma Cervicale in Situ"@it ,
"Cervicaal Adenocarcinoom in Situ"@nl ,
"Cervical Adenocarcinoma in Situ"@en ;
ontology:associatedDisease obo:MONDO_0002974 ;
ontology:definition "tage 0 includes: (Tis, N0, M0). Tis: Carcinoma in situ. N0: No regional lymph node metastasis. M0: No distant metastasis. FIGO no longer includes stage 0."@en ;
ontology:hasSemanticArea obo:NCIT_C15220 .
### http://purl.obolibrary.org/obo/NCIT_C4847
obo:NCIT_C4847 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:Dysplasia ;
obo:NCIT_P106 "Finding"@en ;
terms:conformsTo ;
oboInOwl:hasExactSynonym "Dysplasia of the Colon; Colonic Dysplasia; Dysplasia of Colon; Colon Dysplasia"@en ;
rdfs:comment "A morphologic finding indicating the presence of dysplastic glandular epithelial cells in the colonic mucosa. There is no evidence of invasion. [Definition Source: NCI]"@en ;
rdfs:label "Colon Dysplasia"@en ,
"Colon Dysplasie"@nl ,
"Displasia del Colon"@it ;
ontology:associatedDisease obo:MONDO_0002032 ;
ontology:hasSemanticArea obo:NCIT_C15220 .
### http://purl.obolibrary.org/obo/NCIT_C4848
obo:NCIT_C4848 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:Dysplasia ;
skos:broaderTransitive obo:NCIT_C4847 ,
obo:NCIT_C8362 ;
terms:conformsTo ;
oboInOwl:hasExactSynonym "Low Grade Dysplasia of the Colon; Low-Grade Dysplasia of Colon; Low-Grade Dysplasia of the Colon; Mild Dysplasia of Colon; Low-Grade Colon Dysplasia; Mild Colon Dysplasia; Low-Grade Colonic Dysplasia; Mild Colonic Dysplasia; Mild Dysplasia of the Colon; Low Grade Colon Dysplasia; Low Grade Colonic Dysplasia; Low Grade Dysplasia of Colon"@en ;
rdfs:comment "A morphologic finding indicating the presence of mild dysplastic cellular changes and mild architectural changes in the glandular epithelium of the colonic mucosa. There is no evidence of invasion. [Definition Source: NCI]"@en ;
rdfs:label "Displasia del Colon Lieve"@it ,
"Mild Colon Dysplasia"@en ,
"Milde Colondysplasie"@nl ;
ontology:associatedDisease obo:MONDO_0002032 ;
ontology:hasSemanticArea obo:NCIT_C15220 .
### http://purl.obolibrary.org/obo/NCIT_C4849
obo:NCIT_C4849 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:Dysplasia ;
skos:broaderTransitive obo:NCIT_C4847 ,
obo:NCIT_C8363 ;
obo:NCIT_P106 "Finding"@en ;
terms:conformsTo ;
oboInOwl:hasExactSynonym "Moderate Dysplasia of the Colon; Moderate Colonic Dysplasia; Moderate Colon Dysplasia; Moderate Dysplasia of Colon"@en ;
rdfs:comment "A morphologic finding indicating the presence of moderate dysplastic cellular changes and moderate architectural changes in the glandular epithelium of the colonic mucosa. There is no evidence of invasion. [Definition Source: NCI]"@en ;
rdfs:label "Displasia Moderata del colon"@it ,
"Matige Colondysplasie"@nl ,
"Moderate Colon Dysplasia"@en ;
ontology:associatedDisease obo:MONDO_0002032 ;
ontology:hasSemanticArea obo:NCIT_C15220 .
### http://purl.obolibrary.org/obo/NCIT_C50443
obo:NCIT_C50443 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:IntestinalAbnormality ;
terms:conformsTo ;
rdfs:comment "An eating away or breakdown of any type of external or internal human tissue including but not limited to skin, teeth, mucosa, or somatic, which involves only the outer tissue layer. When tissue surrounds an implanted device, the tissue breakdown may result in migration and loss of the implant material and may result in further complications such as infection or abscess. [Definition Source: NCI]"@en ;
rdfs:label "Erosie"@nl ,
"Erosion"@en ,
"Erosione"@it ;
ontology:associatedDisease obo:MONDO_0005130 ;
ontology:associatedKeywordInDiagnosis "erosioni, erosivo, erosiva" ;
ontology:hasSemanticArea obo:NCIT_C15220 .
### http://purl.obolibrary.org/obo/NCIT_C50588
obo:NCIT_C50588 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:IntestinalAbnormality ;
terms:conformsTo ;
oboInOwl:hasExactSynonym "hyperaemia; hyperemic"@en ;
rdfs:comment "The presence of an increased amount of blood in a part or organ; engorgement. [Definition Source: NCI]"@en ;
rdfs:label "Hyperemia"@en ,
"Hyperemie"@nl ,
"Iperemia"@it ;
ontology:associatedDisease obo:MONDO_0005130 ;
ontology:associatedKeywordInDiagnosis "iperemia"@it ;
ontology:hasSemanticArea obo:NCIT_C15220 .
### http://purl.obolibrary.org/obo/NCIT_C51600
obo:NCIT_C51600 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:CeliacInterventionType ;
skos:broaderTransitive obo:NCIT_C15389 ;
terms:conformsTo ;
rdfs:comment "Removal of tissue from the small intestine for microscopic examination, using an endoscope. [Definition Source: NCI]"@en ;
rdfs:label "Biopsia dell'Intestino Tenue"@it ,
"Biopsie van de Dunne Darm"@nl ,
"Biopsy of Small Intestine"@en ;
ontology:associatedDisease obo:MONDO_0005130 ;
ontology:hasSemanticArea ontology:procedure .
### http://purl.obolibrary.org/obo/NCIT_C51628
obo:NCIT_C51628 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:CervixInterventionType ;
obo:NCIT_P106 "Diagnostic Procedure" ;
terms:conformsTo ;
oboInOwl:hasExactSynonym "Biopsy (cervical); Other method, specify: ECC"@en ;
rdfs:comment "Removal of tissue from the cervix for microscopic examination. [Definition Source: NCI]"@en ;
rdfs:label "Biopsia Cervicale"@it ,
"Cervical Biopsy"@en ,
"Cervicale Biopsie"@nl ;
ontology:associatedDisease obo:MONDO_0002974 ;
ontology:hasSemanticArea ontology:procedure .
### http://purl.obolibrary.org/obo/NCIT_C51678
obo:NCIT_C51678 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:ColonInterventionType ;
skos:broaderTransitive obo:NCIT_C15389 ;
terms:conformsTo ;
oboInOwl:hasExactSynonym "Colonoscopic Biopsy; Colonoscopy and Biopsy; Biopsy of Colon"@en ;
rdfs:comment "Removal of tissue from the colon for microscopic examination, using an endoscope. [Definition Source: NCI]"@en ;
rdfs:label "Biopsia del Colon"@it ,
"Biopsie van de Dikke Darm"@nl ,
"Biopsy of Colon"@en ;
ontology:associatedDisease obo:MONDO_0002032 ;
ontology:hasSNOMEDCode "P114000" ,
"P400000" ;
ontology:hasSemanticArea ontology:procedure ;
ontology:internalNotes "previous SNOMED was P11400, P40" .
### http://purl.obolibrary.org/obo/NCIT_C51683
obo:NCIT_C51683 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:CeliacInterventionType ;
skos:broaderTransitive obo:NCIT_C51600 ;
obo:NCIT_P106 "Diagnostic Procedure" ;
terms:conformsTo ;
oboInOwl:hasExactSynonym "Endoscopic Biopsy of Duodenum; Duodenal Biopsy; Biopsy of Duodenum" ;
rdfs:comment "Removal of tissue from the duodenum for microscopic examination, using an endoscope. [Definition Source: NCI]"@en ;
rdfs:label "Biopsia del Duodeno"@it ,
"Biopsie van de Twaalfvingerige Darm"@nl ,
"Biopsy of Duodenum"@en ;
ontology:associatedDisease obo:MONDO_0005130 ;
ontology:associatedKeywordInMateriali "Biopsia duodeno" ;
ontology:hasSemanticArea ontology:Procedure ,
ontology:procedure ,
.
### http://purl.obolibrary.org/obo/NCIT_C51688
obo:NCIT_C51688 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:ColonSurgeryType ;
skos:broaderTransitive obo:NCIT_C25349 ;
terms:conformsTo ;
oboInOwl:hasExactSynonym "Colonoscopic Polypectomy; Colonic Polypectomy"@en ;
rdfs:comment "Complete or partial removal of a polypoid lesion from the mucosal surface of the large intestine. [Definition Source: NCI]"@en ;
rdfs:label "Colonoscopic Polypectomy"@en ,
"Colonoscopische Polypectomie"@nl ,
"Polipectomia Colonscopica"@it ;
ontology:associatedDisease obo:MONDO_0002032 ;
ontology:hasSemanticArea ontology:procedure .
### http://purl.obolibrary.org/obo/NCIT_C51695
obo:NCIT_C51695 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:CervixSurgeryType ;
skos:broaderTransitive obo:NCIT_C15256 ;
obo:NCIT_P106 "Therapeutic or Preventive Procedure" ;
terms:conformsTo ;
rdfs:comment "Surgical removal of all of the uterus, via an abdominal approach. [Definition Source: NCI]"@en ;
rdfs:label "Isterectomia Addominale Totale"@it ,
"Total Abdominal Hysterectomy"@en ,
"Totale Abdominale Hysterectomie"@nl ;
ontology:annotatedRule "Other method, specify: total Abdominal Hysterectomy"@en ;
ontology:associatedDisease obo:MONDO_0002974 ;
ontology:hasSemanticArea ontology:procedure .
### http://purl.obolibrary.org/obo/NCIT_C51748
obo:NCIT_C51748 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:LungInterventionType ;
obo:NCIT_P106 "Diagnostic Procedure" ;
obo:NCIT_P325 "Removal of tissue from the lung, for microscopic examination." ;
terms:conformsTo ;
rdfs:comment "The removal of a small piece of lung tissue to be checked by a pathologist for cancer or other diseases. The tissue may be removed using a bronchoscope (a thin, lighted, tube-like instrument that is inserted through the trachea and into the lung). It may also be removed using a fine needle inserted through the chest wall, by surgery guided by a video camera inserted through the chest wall, or by an open biopsy. In an open biopsy, a doctor makes an incision between the ribs, removes a sample of lung tissue, and closes the wound with stitches. [Definition Source: NCI]"@en ;
rdfs:label "Biopsia Polmonare"@it ,
"Long Biopsie"@nl ,
"Lung Biopsy"@en ;
ontology:associatedDisease obo:MONDO_0008903 ;
ontology:hasSemanticArea ontology:procedure .
### http://purl.obolibrary.org/obo/NCIT_C51760
obo:NCIT_C51760 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:CervixSurgeryType ;
terms:conformsTo ;
rdfs:comment "Uses a thin, low-voltage electrified wire loop to cut out a thin layer of abnormal tissue; generally used to remove abnormal cells on the surface of the cervix. [Definition Source: NCI]"@en ;
rdfs:label "Cervicale Sprong"@nl ,
"Leep Cervicale"@it ,
"Loop Electrosurgical Excision"@en ;
ontology:associatedDisease obo:MONDO_0002974 ;
ontology:hasSemanticArea ontology:procedure .
### http://purl.obolibrary.org/obo/NCIT_C51782
obo:NCIT_C51782 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:LungInterventionType ;
obo:NCIT_P106 "Diagnostic Procedure" ;
terms:conformsTo ;
oboInOwl:hasExactSynonym "Bronchial Biopsy; Biopsy of Bronchus" ;
rdfs:comment "Removal of tissue from the bronchus for microscopic examination. [Definition Source: NCI]"@en ;
rdfs:label "Biopsia Bronchiale"@it ,
"Bronchial Biopsy"@en ,
"Bronchiale Biopsie"@nl ;
ontology:associatedDisease obo:MONDO_0008903 ;
ontology:definition "Removal of tissue from the bronchus for microscopic examination." ;
ontology:hasSemanticArea ontology:procedure .
### http://purl.obolibrary.org/obo/NCIT_C51902
obo:NCIT_C51902 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:CeliacInterventionType ;
skos:broaderTransitive obo:NCIT_C51600 ;
terms:conformsTo ;
rdfs:comment "Removal of tissue from the jujunum for microscopic examination, using an endoscope. [Definition Source: NCI]"@en ;
rdfs:label "Biopsia del Digiuno"@it ,
"Biopsie van Jejunum"@nl ,
"Biopsy of Jejunum"@en ;
ontology:associatedDisease obo:MONDO_0005130 ;
ontology:hasSemanticArea ontology:procedure .
### http://purl.obolibrary.org/obo/NCIT_C62570
obo:NCIT_C62570 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:CervixPOType ;
terms:conformsTo ;
rdfs:comment """Dyskeratosis is abnormal keratinization occurring prematurely within individual cells or groups of cells below the stratum granulosum.[Defintion Source: ISBN 0-7216-0187-1]
Dyskeratosis congenita is congenital disease characterized by reticular skin pigmentation, nail degeneration, and leukoplakia on the mucous membranes associated with short telomeres. [Defintion Source: PMID 22285015]"""@en ;
rdfs:label "Discheratosi"@it ,
"Dyskeratose"@nl ,
"Dyskeratosis"@en ;
ontology:associatedDisease obo:MONDO_0002974 ;
ontology:hasSNOMEDCode "M740100" ;
ontology:hasSemanticArea obo:NCIT_C15220 .
### http://purl.obolibrary.org/obo/NCIT_C7029
obo:NCIT_C7029 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:IntestinalAbnormality ;
terms:conformsTo ;
rdfs:comment "Gastric heterotopia (GH) is a rare, congenital condition where gastric tissue is found outside of its normal location in the gastric mucosa. It is usually benign and can be found throughout the gastrointestinal (GI) tract. In the duodenum, it is usually seen as multiple polyps, specifically in the duodenal bulb. [Definition Source: PMID 35607542]"@en ;
rdfs:label "Eterotopia Gastrica"@it ,
"Gastric Heterotopia of the Small Intestine"@en ,
"Maag Heterotopie van de Dunne Darm"@nl ;
ontology:associatedDisease obo:MONDO_0005130 ;
ontology:associatedKeywordInDiagnosis "eterotopia" ;
ontology:hasSemanticArea obo:NCIT_C15220 .
### http://purl.obolibrary.org/obo/NCIT_C82901
obo:NCIT_C82901 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:IntestinalAbnormality ;
skos:broaderTransitive obo:NCIT_C3137 ;
terms:conformsTo ;
rdfs:comment "The coexistence of a chronic inflammatory process with a superimposed polymorphonuclear neutrophilic infiltration. [Definition Source: NCI]"@en ;
rdfs:label "Chronic Active Inflammation"@en ,
"Chronische Actieve Ontsteking"@nl ,
"Infiammazione Cronica Attiva"@it ;
ontology:associatedDisease obo:MONDO_0005130 ;
ontology:associatedKeywordInDiagnosis "flogosi cronica attiva" ;
ontology:hasSemanticArea obo:NCIT_C15220 .
### http://purl.obolibrary.org/obo/NCIT_C82967
obo:NCIT_C82967 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:CervixPOType ;
terms:conformsTo ;
rdfs:comment "An inflammatory process characterized by the localized collection of polymorphonuclear neutrophils. [Definition Source: NCI]"@en ;
rdfs:label "Focal Acute Inflammation"@en ,
"Focale Acute Ontsteking"@nl ,
"Infiammazione Acuta Focale"@it ;
ontology:associatedDisease obo:MONDO_0002974 ;
ontology:hasSNOMEDCode "M410000" ;
ontology:hasSemanticArea obo:NCIT_C15220 ;
ontology:internalNotes "old SNOMED M41000"@en .
### http://purl.obolibrary.org/obo/NCIT_C82971
obo:NCIT_C82971 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:IntestinalAbnormality ;
terms:conformsTo ;
rdfs:comment "A finding indicating the presence of increased blood volume in the vascular lumen. [Definition Source: NCI]"@en ;
rdfs:label "Congestione"@it ,
"Tissue Congestion"@en ,
"Weefsel Congestie"@nl ;
ontology:associatedDisease obo:MONDO_0005130 ;
ontology:associatedKeywordInDiagnosis "congestione" ;
ontology:hasSemanticArea obo:NCIT_C15220 .
### http://purl.obolibrary.org/obo/NCIT_C8360
obo:NCIT_C8360 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:IntestinalAbnormality ;
terms:conformsTo ;
rdfs:comment "A morphologic finding indicating the replacement of epithelial tissue outside the intestines by intestinal-type epithelium. [Definition Source: NCI]"@en ;
rdfs:label "Intestinal Metaplasia"@en ,
"Intestinale Metaplasie"@nl ,
"Metaplasia Intestinale"@it ;
ontology:associatedDisease obo:MONDO_0005130 ;
ontology:associatedKeywordInDiagnosis "metaplasia intestinale" ;
ontology:hasSemanticArea obo:NCIT_C15220 .
### http://purl.obolibrary.org/obo/NCIT_C8361
obo:NCIT_C8361 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:IntestinalAbnormality ;
terms:conformsTo ;
rdfs:comment "Precancerous change of the mucosa of the stomach with intestinal epithelium, and is associated with an increased risk of dysplasia and cancer. [Definition Source: PMID 29606921]"@en ;
rdfs:label "Gastric Metaplasia"@en ,
"Maagmetaplasie"@nl ,
"Metaplasia Gastrica"@it ;
ontology:associatedDisease obo:MONDO_0005130 ;
ontology:associatedKeywordInDiagnosis "metaplasia gastrica" ;
ontology:hasSemanticArea obo:NCIT_C15220 .
### http://purl.obolibrary.org/obo/NCIT_C8362
obo:NCIT_C8362 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:Dysplasia ;
terms:conformsTo ;
oboInOwl:hasExactSynonym "CIN 1; DYSPLASIA, MILD; MILD DYSPLASIA, CIN 1"@en ;
rdfs:comment "A morphologic finding indicating the presence of mild cellular atypia associated with mild architectural changes in a tissue sample. [Definition Source: NCI]"@en ;
rdfs:label "Displasia Lieve"@it ,
"Mild Dysplasia"@en ,
"Milde Dysplasie"@nl ;
ontology:associatedDisease obo:MONDO_0002032 ;
ontology:hasSNOMEDCode "M740060" ;
ontology:hasSemanticArea obo:NCIT_C15220 ;
ontology:internalNotes "original SNOMED M74006"@en .
### http://purl.obolibrary.org/obo/NCIT_C8363
obo:NCIT_C8363 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:Dysplasia ;
skos:broaderTransitive obo:NCIT_C156083 ;
terms:conformsTo ;
oboInOwl:hasExactSynonym "Moderate Dysplasia; CIN 2; DYSPLASIA, MODERATE; MODERATE DYSPLASIA, CIN 2"@en ;
rdfs:comment "A morphologic finding indicating the presence of moderate cellular atypia associated with moderate architectural changes in a tissue sample. [Definition Source: NCI]"@en ;
rdfs:label "Displasia Moderata"@it ,
"Matige Dysplasie"@nl ,
"Moderate Dysplasia"@en ;
ontology:associatedDisease obo:MONDO_0002032 ;
ontology:hasSNOMEDCode "M740070" ;
ontology:hasSemanticArea obo:NCIT_C15220 .
### http://purl.obolibrary.org/obo/NCIT_C8364
obo:NCIT_C8364 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:Dysplasia ;
skos:broaderTransitive obo:NCIT_C156083 ;
obo:NCIT_P106 "Finding"@en ;
terms:conformsTo ;
oboInOwl:hasExactSynonym "Severe Dysplasia; CIN 3; DYSPLASIA, SEVERE; SEVERE DYSPLASIA, CIN 3"@en ;
rdfs:comment "A morphologic finding indicating the presence of severe cellular atypia associated with severe architectural changes in a tissue sample. [Definition Source: NCI]"@en ;
rdfs:label "Displasia Grave"@it ,
"Ernstige Dysplasie"@nl ,
"Severe Dysplasia"@en ;
ontology:associatedDisease obo:MONDO_0002032 ;
ontology:hasSemanticArea obo:NCIT_C15220 .
### http://purl.obolibrary.org/obo/NCIT_C86074
obo:NCIT_C86074 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:ColonSurgeryType ;
terms:conformsTo ;
oboInOwl:hasExactSynonym "Hemicolectomy"@en ;
rdfs:comment "Surgical removal of approximately half of the colon. [Definition Source: NCI]"@en ;
rdfs:label "Emicolectomia"@it ,
"Hemicolectomie"@nl ,
"Hemicolectomy"@en ;
ontology:associatedDisease obo:MONDO_0002032 ;
ontology:hasSNOMEDCode "P111500" ;
ontology:hasSemanticArea ontology:procedure ;
ontology:internalNotes "old SNOMED P11150" .
### http://purl.obolibrary.org/obo/NCIT_C94470
obo:NCIT_C94470 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:CervixSurgeryType ;
skos:broaderTransitive obo:NCIT_C15256 ;
terms:conformsTo ;
rdfs:comment "Radical hysterectomy refers to the excision of the uterus en bloc with the parametrium (ie, round, broad, cardinal, and uterosacral ligaments) and the upper one-third to one-half of the vagina. The surgeon usually also performs a bilateral pelvic lymph node dissection. The procedure requires a thorough knowledge of pelvic anatomy, meticulous attention to sharp dissection, and careful technique to allow dissection of the ureters and mobilization of both bladder and rectum from the vagina. Particular care must be taken with the vasculature of the pelvic side walls and the venous plexuses at the lateral corners of the bladder to avoid excessive blood loss. Removal of the ovaries and fallopian tubes is not part of a radical hysterectomy; they may be preserved if clinically appropriate."@en ;
rdfs:label "Isterectomia Radicale"@it ,
"Radical Hysterectomy"@en ,
"Radicale Hysterectomie"@nl ;
ontology:associatedDisease obo:MONDO_0002974 ;
ontology:hasSemanticArea ontology:procedure .
### http://purl.obolibrary.org/obo/UBERON_0000316
obo:UBERON_0000316 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:CervixAnatomicalEntity ;
terms:conformsTo ,
;
oboInOwl:hasExactSynonym "cervix mucus" ;
rdfs:comment "A substance produced by the cervix and endocervical glands[BTO]. Thick acidic mucus that blocks the cervical os after mestruation [WP]. This 'infertile' mucus blocks spermatozoa from entering the uterus." ;
rdfs:label "Baarmoederhalsslijm"@nl ,
"Cervical Mucus"@en ,
"Muco Cervicale"@it ;
ontology:associatedDisease obo:MONDO_0002974 ;
ontology:hasSemanticArea obo:NCIT_C13717 .
### http://purl.obolibrary.org/obo/UBERON_0000320
obo:UBERON_0000320 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:CeliacAnatomicalEntity ;
skos:broaderTransitive obo:UBERON_0002114 ;
terms:conformsTo ;
oboInOwl:hasExactSynonym "doudenal mucosa; mucosa of duodenum; mucous membrane of duodenum; duodenal mucous membrane" ;
oboInOwl:hasRelatedSynonym "duodenum mucosa" ;
rdfs:comment "The inner lining of the duodenum. [Definition Source: NCI]"@en ;
rdfs:label "Duodenal Mucosa"@en ,
"Mucosa Duodenale"@it ,
"Slijmvlies van de Twaalfvingerige Darm"@nl ;
rdfs:seeAlso obo:NCIT_C188062 ;
ontology:associatedDisease obo:MONDO_0005130 ;
ontology:associatedKeywordInDiagnosis "mucosa duodenale" ;
ontology:hasSemanticArea obo:NCIT_C13717 .
### http://purl.obolibrary.org/obo/UBERON_0000916
obo:UBERON_0000916 rdf:type owl:NamedIndividual ,
ontology:ColonAnatomicalEntity ;
obo:UBPROP_0000010 "Vertebrate specific. In arthropods 'abdomen' is the most distal section of the body which lies behind the thorax or cephalothorax. If need be we can introduce some grouping class" ;
terms:conformsTo ;
oboInOwl:hasExactSynonym "abdominopelvis; abdominopelvic region"@en ;
oboInOwl:hasRelatedSynonym "belly; celiac region; adult abdomen"@en ;
rdfs:comment "The subdivision of the vertebrate body between the thorax and pelvis. The ventral part of the abdomen contains the abdominal cavity and visceral organs. The dorsal part includes the abdominal section of the vertebral column. [Definition Source: http://orcid.org/0000-0002-6601-2165]"@en ;
rdfs:label "Abdomen"@en ,
"Addome"@it ,
"Buik"@nl ;
rdfs:seeAlso obo:NCIT_C12664 ;
ontology:associatedDisease obo:MONDO_0002032 ;
ontology:hasSNOMEDCode "TY4100" ;
ontology:hasSemanticArea obo:NCIT_C13717 ;
ontology:internalNotes "original SNOMED TY4100" .
### http://purl.obolibrary.org/obo/UBERON_0000977
obo:UBERON_0000977 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:LungAnatomicalEntity ;
dc:description "A thin layer of tissue that covers the lungs and lines the interior wall of the chest cavity. It protects and cushions the lungs. This tissue secretes a small amount of fluid that acts as a lubricant, allowing the lungs to move smoothly in the chest cavity while breathing.; The serous membrane that lines the wall of the thoracic cavity and the surface of the lungs. [Definition Source: NCI]"@en ;
terms:conformsTo ;
rdfs:comment "The invaginated serous membrane that surrounds the lungs (the visceral portion) and lines the walls of the pleural cavity (parietal portion)."@en ;
rdfs:label "Borstvlies"@nl ,
"Pleura"@en ,
"Pleura"@it ;
rdfs:seeAlso obo:NCIT_C12469 ;
ontology:associatedDisease obo:MONDO_0008903 ;
ontology:hasSNOMEDCode "T29000" ;
ontology:hasSemanticArea obo:NCIT_C13717 .
### http://purl.obolibrary.org/obo/UBERON_0000995
obo:UBERON_0000995 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:CervixAnatomicalEntity ;
obo:UBPROP_0000001 "he hollow muscular organ in female mammals in which the blastocyst normally becomes embedded and in which the developing embryo and fetus is nourished. Its cavity opens into the vagina below and into a uterine tube on either side."@en ;
terms:conformsTo ;
oboInOwl:hasRelatedSynonym "Uterus"@en ;
rdfs:comment "The female muscular organ of gestation in which the developing embryo or fetus is nourished until birth."@en ;
rdfs:label "Baarmoeder, Niet Anders Gespecificeerd"@nl ,
"Utero, Non Altrimenti Specificato"@it ,
"Uterus, NOS"@en ;
rdfs:seeAlso obo:NCIT_C12405 ;
ontology:associatedDisease obo:MONDO_0002974 ;
ontology:hasSemanticArea obo:NCIT_C13717 ;
ontology:taxonNotes "Most animals that lay eggs, such as birds and reptiles, have an oviduct instead of a uterus. In monotremes, mammals which lay eggs and include the platypus, either the term uterus or oviduct is used to describe the same organ, but the egg does not develop a placenta within the mother and thus does not receive further nourishment after formation and fertilization. Marsupials have two uteruses, each of which connect to a lateral vagina and which both use a third, middle 'vagina' which functions as the birth canal. Marsupial embryos form a choriovitelline 'placenta' (which can be thought of as something between a monotreme egg and a 'true' placenta), in which the egg's yolk sac supplies a large part of the embryo's nutrition but also attaches to the uterine wall and takes nutrients from the mother's bloodstream."@en .
### http://purl.obolibrary.org/obo/UBERON_0001052
obo:UBERON_0001052 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:ColonAnatomicalEntity ;
skos:broaderTransitive obo:UBERON_0012652 ;
terms:conformsTo ;
oboInOwl:hasExactSynonym "terminal portion of intestine"@en ;
oboInOwl:hasRelatedSynonym "terminal portion of large intestine; rectal sac; intestinum rectum"@en ;
rdfs:comment "Rectum, Not Otherwise Specified (NOS)"@en ;
rdfs:label "Rectum, NOS"@en ,
"Rectum, Niet Anders Gespecificeerd"@nl ,
"Retto, Non Altrimenti Specificato"@it ;
rdfs:seeAlso obo:NCIT_C12390 ;
ontology:annotatedRule "Presence of keyword \"Rectum NOS\" in \"Materiali\" field in AOEC Database."@en ;
ontology:associatedDisease obo:MONDO_0002032 ;
ontology:definition "The terminal portion of the intestinal tube, terminating with the anus. [Definition Source: NCI]"@en ;
ontology:hasSNOMEDCode "T680000" ;
ontology:hasSemanticArea obo:NCIT_C13717 ;
ontology:internalNotes "original SNOMED T68000" .
### http://purl.obolibrary.org/obo/UBERON_0001153
obo:UBERON_0001153 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:ColonAnatomicalEntity ;
skos:broaderTransitive obo:UBERON_0001155 ;
terms:conformsTo ;
oboInOwl:hasExactSynonym "caecum; cecum; intestinum crassum caecum"@en ;
oboInOwl:hasRelatedSynonym "intestinum crassum cecum; intestinum caecum; blindgut; blind intestine"@en ;
rdfs:comment "A pouch in the digestive tract that connects the ileum with the ascending colon of the large intestine. It is separated from the ileum by the ileocecal valve, and is the beginning of the large intestine. It is also separated from the colon by the cecocolic junction."@en ;
rdfs:label "Blinde Darm"@nl ,
"Caecum"@en ,
"Cieco"@it ;
rdfs:seeAlso obo:NCIT_C12381 ;
ontology:annotatedRule "Keyword Caecum in \"Materiali\" field"@en ;
ontology:associatedDisease obo:MONDO_0002032 ;
ontology:hasSNOMEDCode "T671000" ;
ontology:hasSemanticArea obo:NCIT_C13717 ;
ontology:internalNotes "original SNOMED T67100" .
### http://purl.obolibrary.org/obo/UBERON_0001155
obo:UBERON_0001155 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:ColonAnatomicalEntity ;
skos:broaderTransitive obo:UBERON_0012652 ;
terms:conformsTo ;
oboInOwl:hasExactSynonym "large bowel"@en ;
oboInOwl:hasRelatedSynonym "hindgut"@en ;
rdfs:comment "Colon, Not Otherwise Specified (NOS)"@en ;
rdfs:label "Colon, NOS"@en ,
"Colon, Non Altrimenti Specificato"@it ,
"Dikke Darm, Niet Anders Gespecificeerd"@nl ;
rdfs:seeAlso obo:NCIT_C12382 ;
ontology:associatedDisease obo:MONDO_0002032 ;
ontology:definition "Last portion of the large intestine before it becomes the rectum."@en ;
ontology:hasSNOMEDCode "T670000" ;
ontology:hasSemanticArea obo:NCIT_C13717 ;
ontology:internalNotes "original SNOMED T67000" .
### http://purl.obolibrary.org/obo/UBERON_0001156
obo:UBERON_0001156 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:ColonAnatomicalEntity ;
owl:sameAs obo:UBERON_0008972 ;
skos:broaderTransitive obo:UBERON_0001155 ;
terms:conformsTo ;
oboInOwl:hasExactSynonym "colon ascendens"@en ;
oboInOwl:hasRelatedSynonym "spiral colon"@en ;
rdfs:comment "Section of colon which is distal to the cecum and proximal to the transversecolon."@en ;
rdfs:label "Ascending Colon"@en ,
"Colon Ascendente"@it ,
"Oplopende Dubbele Punt"@nl ;
rdfs:seeAlso obo:NCIT_C12265 ;
ontology:associatedDisease obo:MONDO_0002032 ;
ontology:hasSNOMEDCode "T672000" ;
ontology:hasSemanticArea obo:NCIT_C13717 ;
ontology:internalNotes "original SNOMED T67200" .
### http://purl.obolibrary.org/obo/UBERON_0001157
obo:UBERON_0001157 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:ColonAnatomicalEntity ;
skos:broaderTransitive obo:UBERON_0001155 ;
terms:conformsTo ;
oboInOwl:hasExactSynonym "colon transversum"@en ;
rdfs:comment "The proximal-distal subdivision of colon that runs transversely across the upper part of the abdomen, from the right to the left colic flexure. Continuous with the descending colon."@en ;
rdfs:label "Colon Trasverso"@it ,
"Dwars Dubbele Punt"@nl ,
"Transverse Colon"@en ;
rdfs:seeAlso obo:NCIT_C12385 ;
ontology:annotatedRule "Keyword \"trasverso\" in \"Materiali\" field."@en ;
ontology:associatedDisease obo:MONDO_0002032 ;
ontology:hasSNOMEDCode "T674000" ;
ontology:hasSemanticArea obo:NCIT_C13717 ;
ontology:internalNotes "original SNOMED T67400" .
### http://purl.obolibrary.org/obo/UBERON_0001158
obo:UBERON_0001158 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:ColonAnatomicalEntity ;
skos:broaderTransitive obo:UBERON_0001155 ;
terms:conformsTo ;
oboInOwl:hasExactSynonym "colon descendens"@en ;
rdfs:comment "The portion of the colon between the left colic flexure and the sigmoid colon at the pelvic brim; the portion of the descending colon lying in the left iliac fossa is sometimes called the iliac colon."@en ;
rdfs:label "Aflopende Dubbele Punt"@nl ,
"Colon Discendente"@it ,
"Descending Colon"@en ;
rdfs:seeAlso obo:NCIT_C12268 ;
ontology:associatedDisease obo:MONDO_0002032 ;
ontology:hasSNOMEDCode "T676000" ;
ontology:hasSemanticArea obo:NCIT_C13717 .
### http://purl.obolibrary.org/obo/UBERON_0001159
obo:UBERON_0001159 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:ColonAnatomicalEntity ;
skos:broaderTransitive obo:UBERON_0001155 ;
terms:conformsTo ;
oboInOwl:hasRelatedSynonym "colon sigmoideum; pelvic colon; sigmoid colon; sigmoid flexure"@en ;
rdfs:comment "The part of the large intestine that is closest to the rectum and anus. It forms a loop that averages about 40 cm. in length, and normally lies within the pelvis, but on account of its freedom of movement it is liable to be displaced into the abdominal cavity."@en ;
rdfs:label "Colon Sigmoideo"@it ,
"Sigmoid Colon"@en ,
"Sigmoid Colon"@nl ;
rdfs:seeAlso obo:NCIT_C12384 ;
ontology:associatedDisease obo:MONDO_0002032 ;
ontology:hasSNOMEDCode "T677000" ;
ontology:hasSemanticArea obo:NCIT_C13717 ;
ontology:internalNotes "original SNOMED T67700" .
### http://purl.obolibrary.org/obo/UBERON_0001164
obo:UBERON_0001164 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:CeliacAnatomicalEntity ;
terms:conformsTo ;
oboInOwl:hasExactSynonym "stomach greater curvature" ;
rdfs:comment "The lateral and inferior border of the stomach. Attached to it is the greater omentum. [Definition Source: NCI]"@en ;
rdfs:label "Curvatura Maggiore dello Stomaco"@it ,
"Greater Curvature of Stomach"@en ,
"Grotere Kromming van de Maag"@nl ;
rdfs:seeAlso obo:NCIT_C12262 ;
ontology:associatedDisease obo:MONDO_0005130 ;
ontology:associatedKeywordInMateriali "Corpo" ;
ontology:hasSemanticArea obo:NCIT_C13717 .
### http://purl.obolibrary.org/obo/UBERON_0001165
obo:UBERON_0001165 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:CeliacAnatomicalEntity ;
terms:conformsTo ;
oboInOwl:hasBroadSynonym "antrum" ;
oboInOwl:hasExactSynonym "antrum of stomach; stomach pyloric antrum" ;
oboInOwl:hasRelatedSynonym "antrum pyloricum; antrum of Willis; stomach antrum; antrum pylori; gastric antrum" ;
rdfs:comment "The initial part of the pyloric canal of the stomach. This site contains endocrine cells that produce gastrin and somatostatin. [Definition Source: NCI]"@en ;
rdfs:label "Antro Pilorico"@it ,
"Antrum Pylori"@en ,
"Pylorus Antrum"@nl ;
rdfs:seeAlso obo:NCIT_C12259 ;
ontology:associatedDisease obo:MONDO_0005130 ;
ontology:associatedKeywordInMateriali "Antro" ;
ontology:hasSemanticArea obo:NCIT_C13717 .
### http://purl.obolibrary.org/obo/UBERON_0001212
obo:UBERON_0001212 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:CeliacAnatomicalEntity ;
skos:broaderTransitive obo:UBERON_0002114 ;
terms:conformsTo ;
rdfs:comment "Compound, tubular, submucosal glands located in the duodenum proximal to the sphincter of Oddi; these glands produce alkaline-rich secretions that function to both protect the duodenum from the acidic content of the stomach and to enable intestinal enzymes to activate, thus enabling absorption to start. [Definition Source: NCI]"@en ;
rdfs:label "Duodenal Gland"@en ,
"Duodenale Klier"@nl ,
"Ghiandola Duodenale"@it ;
rdfs:seeAlso obo:NCIT_C13010 ;
ontology:associatedDisease obo:MONDO_0005130 ;
ontology:hasOntobeeAnnotation """editor note: currently defined as equivalent to any submucosal gland in the duodenum.
database_cross_reference: EMAPA:36522; GAID:314; NCIT:C13010; FMA:15060; http://www.snomedbrowser.com/Codes/Details/41298001; http://en.wikipedia.org/wiki/Brunner's_glands; MESH:A03.492.411.620.270.322; UMLS:C0006323; MA:0001551; http://linkedlifedata.com/resource/umls/id/C0006323; BTO:0002376
has_exact_synonym: submucosal gland of duodenum; Brunner's gland; gland of Brunner
has_obo_namespace: uberon
has_related_synonym: glandula duodenales Brunneri; glandula duodenales
http://www.geneontology.org/formats/oboInOwl#id: UBERON:0001212
in_subset: http://purl.obolibrary.org/obo/uberon/core#organ_slim; http://purl.obolibrary.org/obo/uberon/core#pheno_slim; http://purl.obolibrary.org/obo/uberon/core#uberon_slim
taxon_notes: Said to be absent outside mammlian (Andrew 1959) but Ziswiler and Farner (1972) noted similar glands at the gastroduodenal junction of some birds""" ;
ontology:hasSemanticArea obo:NCIT_C13717 .
### http://purl.obolibrary.org/obo/UBERON_0002048
obo:UBERON_0002048 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:LungAnatomicalEntity ;
obo:NCIT_P325 "Either of two organs which allow gas exchange absorbing oxygen from inhaled air and releasing carbon dioxide with exhaled air." ;
terms:conformsTo ;
oboInOwl:hasExactSynonym "pulmo" ;
rdfs:comment "Respiration organ that develops as an oupocketing of the esophagus."@en ;
rdfs:label "Long"@nl ,
"Lung"@en ,
"Polmone"@it ;
rdfs:seeAlso obo:NCIT_C12468 ;
ontology:associatedDisease obo:MONDO_0008903 ;
ontology:hasSNOMEDCode "T280000" ;
ontology:hasSemanticArea obo:NCIT_C13717 ;
ontology:internalNotes "original SNOMED T28000" ;
ontology:taxonNotes "respiration organ in all air-breathing animals, including most tetrapods, a few fish and a few snails. In mammals and the more complex life forms, the two lungs are located in the chest on either side of the heart. Their principal function is to transport oxygen from the atmosphere into the bloodstream, and to release carbon dioxide from the bloodstream into the atmosphere. This exchange of gases is accomplished in the mosaic of specialized cells that form millions of tiny, exceptionally thin-walled air sacs called alveoli. // Avian lungs do not have alveoli as mammalian lungs do, they have Faveolar lungs. They contain millions of tiny passages known as para-bronchi, connected at both ends by the dorsobronchi" .
### http://purl.obolibrary.org/obo/UBERON_0002108
obo:UBERON_0002108 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:CeliacAnatomicalEntity ;
terms:conformsTo ;
rdfs:comment "The section of the intestines between the pylorus and cecum. The small intestine is approximately 20 feet long and consists of the duodenum, the jejunum, and the ileum. Its main function is to absorb nutrients from food as the food is transported to the large intestine. [Definition Source: NCI]"@en ;
rdfs:label "Dunne Darm"@nl ,
"Intestino Tenue"@it ,
"Small Intestine"@en ;
rdfs:seeAlso obo:NCIT_C12386 ;
ontology:associatedDisease obo:MONDO_0005130 ;
ontology:hasSemanticArea obo:NCIT_C13717 .
### http://purl.obolibrary.org/obo/UBERON_0002114
obo:UBERON_0002114 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:CeliacAnatomicalEntity ;
obo:UBPROP_0000001 "The fixed portion of the small intestine deeply lodged in the posterior wall of the abdomen and extending from the pylorus to the beginning of the jejunum." ;
terms:conformsTo ;
oboInOwl:hasRelatedSynonym "upper intestine; proximal intestine" ;
rdfs:comment "A jointed tube 25-30 cm long that connects the stomach to the jejunum. [Definition Source: NCI]"@en ;
rdfs:label "Duodeno"@it ,
"Duodenum"@en ,
"Twaalfvingerige darm"@nl ;
rdfs:seeAlso obo:NCIT_C12263 ;
ontology:associatedDisease obo:MONDO_0005130 ;
ontology:hasSNOMEDCode "T643000" ;
ontology:hasSemanticArea obo:NCIT_C13717 ;
ontology:internalNotes "original SNOMED T-64300" ;
ontology:taxonNotes "In fish, the divisions of the small intestine are not as clear, and the terms anterior intestine or proximal intestine may be used instead of duodenum.; In humans, the duodenum is a hollow jointed tube about 10-15 inches (25-38 centimetres) long connecting the stomach to the jejunum. It begins with the duodenal bulb and ends at the ligament of Treitz." .
### http://purl.obolibrary.org/obo/UBERON_0002115
obo:UBERON_0002115 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:CeliacAnatomicalEntity ;
terms:conformsTo ;
rdfs:comment "The portion of the small intestine that extends from the duodenum to the ileum. [Definition Source: NCI]"@en ;
rdfs:label "Digiuno"@it ,
"Jejunum"@en ,
"Jejunum"@nl ;
rdfs:seeAlso obo:NCIT_C12388 ;
ontology:associatedDisease obo:MONDO_0005130 ;
ontology:hasSemanticArea obo:NCIT_C13717 .
### http://purl.obolibrary.org/obo/UBERON_0002116
obo:UBERON_0002116 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:ColonAnatomicalEntity ;
terms:conformsTo ;
oboInOwl:hasRelatedSynonym "intestinum ileum; lower intestine; posterior intestine; distal intestine"@en ;
rdfs:comment "The portion of the small intestine that extends from the jejunum to the colon"@en ;
rdfs:label "Ileo"@it ,
"Ileum"@en ,
"Ileum"@nl ;
rdfs:seeAlso obo:NCIT_C12387 ;
ontology:associatedDisease obo:MONDO_0002032 ;
ontology:hasSNOMEDCode "T65200" ,
"T679210" ;
ontology:hasSemanticArea obo:NCIT_C13717 ;
ontology:taxonNotes "The ileum is the final section of the small intestine in most higher vertebrates, including mammals, reptiles, and birds. In fish, the divisions of the small intestine are not as clear and the terms posterior intestine or distal intestine may be used instead of ileum." .
### http://purl.obolibrary.org/obo/UBERON_0002185
obo:UBERON_0002185 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:LungAnatomicalEntity ;
terms:conformsTo ;
oboInOwl:hasExactSynonym "bronchi; bronchial trunk" ;
oboInOwl:hasRelatedSynonym "bronchial tissue" ;
rdfs:comment "The upper conducting airways of the lung; these airways arise from the terminus of the trachea"@en ;
rdfs:label "Bronchus"@en ,
"Bronchus"@nl ,
"Bronco"@it ;
rdfs:seeAlso obo:NCIT_C12683 ;
ontology:associatedDisease obo:MONDO_0008903 ;
ontology:hasSNOMEDCode "T260000" ;
ontology:hasSemanticArea obo:NCIT_C13717 ;
ontology:internalNotes "original SNOMED T26000" ;
ontology:taxonNotes "In humans, the main bronchus is histologically identical to trachea; 2ary and 3ary bronchi are not; epithelium becomes simple columnar, goblet cell number decreases, elastic fibers in lamina propria increases, distribution more uniform. Muscular layer between mucosa and submucosa appears. cartilage rings become discontinuous plates connected by fibrous connective tissue" .
### http://purl.obolibrary.org/obo/UBERON_0003346
obo:UBERON_0003346 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:ColonAnatomicalEntity ;
skos:broaderTransitive obo:UBERON_0001155 ;
terms:conformsTo ;
oboInOwl:hasExactSynonym "mucous membrane of rectum; rectum mucous membrane; mucosa of organ of rectum; rectal mucosa; rectum mucosa; rectal mucous membrane; rectum mucosa of organ; organ mucosa of rectum; rectum organ mucosa"@en ;
rdfs:comment "A mucosa that is part of a rectum"@en ;
rdfs:label "Membrana Mucosa Rettale"@it ,
"Rectaal Slijmvlies"@nl ,
"Rectal Mucous Membrane"@en ;
ontology:associatedDisease obo:MONDO_0002032 ;
ontology:hasSNOMEDCode "T680100" ;
ontology:hasSemanticArea obo:NCIT_C13717 .
### http://purl.obolibrary.org/obo/UBERON_0003728
obo:UBERON_0003728 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:LungAnatomicalEntity ;
terms:conformsTo ;
oboInOwl:hasExactSynonym "mediastinal part of chest" ;
rdfs:comment "The central part of the thoracic cavity enclosed by the left and right pleurae."@en ;
rdfs:label "Mediastino"@it ,
"Mediastinum"@en ,
"Mediastinum"@nl ;
rdfs:seeAlso obo:NCIT_C12748 ;
ontology:associatedDisease obo:MONDO_0008903 ;
ontology:hasSNOMEDCode "TY2300" ;
ontology:hasSemanticArea obo:NCIT_C13717 ;
ontology:internalNotes "original SNOMED TY2300, I decided to left it untouched since it is quite peculiar" .
### http://purl.obolibrary.org/obo/UBERON_0004801
obo:UBERON_0004801 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:CervixAnatomicalEntity ;
obo:UBPROP_0000010 "The epithelium of the cervix is varied. The ectocervix (more distal, by the vagina) is composed of nonkeratinized stratified squamous epithelium. The endocervix (more proximal, within the uterus) is composed of simple columnar epithelium." ;
terms:conformsTo ;
oboInOwl:hasExactSynonym "cervical epithelium; epithelium of cervix; cervix epithelial tissue; cervical canal epithelial tissue; cervical canal epithelium" ;
rdfs:comment "An epithelium that is part of a uterine cervix" ;
rdfs:label "Cervix Epitheel"@nl ,
"Cervix Epithelium"@en ,
"Epitelio della Cervice"@it ;
rdfs:seeAlso obo:NCIT_C49218 ;
ontology:associatedDisease obo:MONDO_0002974 ;
ontology:hasSemanticArea obo:NCIT_C13717 .
### http://purl.obolibrary.org/obo/UBERON_0006922
obo:UBERON_0006922 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:CervixAnatomicalEntity ;
skos:broaderTransitive obo:UBERON_0004801 ;
terms:conformsTo ;
oboInOwl:hasExactSynonym "cervical squamous epithelium" ;
rdfs:comment "The squamous epithelium of the cervical portio is similar to that of the vagina, except that it is generally smooth and lacks rete pegs. Colposcopically, it appears featureless except for a fine network of vessels which is sometimes visible. The relative opacity and pale pink coloration of the squamous epithelium derives from its multi-layered histology and the location of its supporting vessels below the basement membrane." ;
rdfs:label "Cervix Plaveiselepitheel"@nl ,
"Cervix Squamous Epithelium"@en ,
"Epitelio Squamoso della Cervice"@it ;
rdfs:seeAlso obo:NCIT_C49219 ;
ontology:associatedDisease obo:MONDO_0002974 ;
ontology:hasSemanticArea obo:NCIT_C13717 .
### http://purl.obolibrary.org/obo/UBERON_0007644
obo:UBERON_0007644 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:LungAnatomicalEntity ;
terms:conformsTo ;
oboInOwl:hasExactSynonym "lymph node of thorax" ;
oboInOwl:hasRelatedSynonym "deep thoracic lymph node" ;
rdfs:comment "A lymph node that is part of a thorax. Includes lymph nodes of the lungs and mediastinal lymph nodes" ;
rdfs:label "Linfonodo Toracico"@it ,
"Thoracale Lymfeknoop"@nl ,
"Thoracic Lymph Node"@en ;
rdfs:seeAlso obo:NCIT_C33769 ;
ontology:associatedDisease obo:MONDO_0008903 ;
ontology:hasSNOMEDCode "T083000" ;
ontology:hasSemanticArea obo:NCIT_C13717 .
### http://purl.obolibrary.org/obo/UBERON_0008342
obo:UBERON_0008342 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:CeliacAnatomicalEntity ;
skos:broaderTransitive obo:UBERON_0002114 ;
terms:conformsTo ;
rdfs:comment "An intestinal villus in the duodenum." ;
rdfs:label "Intestinal Villus of Duodenum"@en ,
"Intestinale Villus van de Twaalfvingerige Darm"@nl ,
"Villi Intestinali del Duodeno"@it ;
ontology:associatedDisease obo:MONDO_0005130 ;
ontology:hasSemanticArea obo:NCIT_C13717 .
### http://purl.obolibrary.org/obo/UBERON_0008346
obo:UBERON_0008346 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:CeliacAnatomicalEntity ;
skos:broaderTransitive obo:UBERON_0002114 ;
terms:conformsTo ;
oboInOwl:hasExactSynonym "epithelium of duodenum" ;
rdfs:comment "An epithelium that is part of a duodenum."@en ;
rdfs:label "Duodenaal Epitheel"@nl ,
"Duodenal Epithelium"@en ,
"Epitelio Duodenale"@it ;
ontology:associatedDisease obo:MONDO_0005130 ;
ontology:hasSemanticArea obo:NCIT_C13717 .
### http://purl.obolibrary.org/obo/UBERON_0008971
obo:UBERON_0008971 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:ColonAnatomicalEntity ;
skos:broaderTransitive obo:UBERON_0001155 ;
terms:conformsTo ;
oboInOwl:hasRelatedSynonym "distal colon"@en ;
rdfs:comment "The distal portion of the colon; it develops embryonically from the hindgut and functions in the storage and elimination of waste."@en ;
rdfs:label "Colon Sinistro"@it ,
"Left Colon"@en ,
"Linker Dubbele Punt"@nl ;
rdfs:seeAlso obo:NCIT_C33929 ;
ontology:associatedDisease obo:MONDO_0002032 ;
ontology:hasSNOMEDCode "T679950" ;
ontology:hasSemanticArea obo:NCIT_C13717 ;
ontology:internalNotes "previous SNOMED T67995" .
### http://purl.obolibrary.org/obo/UBERON_0008972
obo:UBERON_0008972 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:ColonAnatomicalEntity ;
skos:broaderTransitive obo:UBERON_0001155 ;
terms:conformsTo ;
oboInOwl:hasRelatedSynonym "proximal colon"@en ;
rdfs:comment "The proximal portion of the colon, extending from the ileocecal valve usually to a point proximal to the left colic flexure; it develops embryonically from the terminal portion of the midgut and functions in absorption."@en ;
rdfs:label "Colon Destro"@it ,
"Rechter Dubbele Punt"@nl ,
"Right Colon"@en ;
rdfs:seeAlso obo:NCIT_C12383 ;
ontology:associatedDisease obo:MONDO_0002032 ;
ontology:hasSNOMEDCode "T679650" ;
ontology:hasSemanticArea obo:NCIT_C13717 ;
ontology:internalNotes "original SNOMED T67965" .
### http://purl.obolibrary.org/obo/UBERON_0012250
obo:UBERON_0012250 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:CervixAnatomicalEntity ;
skos:broaderTransitive obo:UBERON_0004801 ;
obo:UBPROP_0000010 "The 'glandular' or columnar epithelium of the cervix is located cephalad to the squamocolumnar junction. It covers a variable amount of the ectocervix and lines the endocervical canal. It is comprised of a single layer of mucin-secreting cells. The epithelium is thrown into longitudinal folds and invaginations that make up the so-called endocervical glands (they are not true glands). These infolding crypts and channels make the cytologic and colposcopic detection of neoplasia less reliable and more problematic. The complex architecture of the endocervical glands gives the columnar epithelium a papillary appearance through the colposcope and a grainy appearance upon gross visual inspection. The single cell layer allows the coloration of the underlying vasculature to be seen more easily. Therefore, the columnar epithelium appears more red in comparison with the more opaque squamous epithelium." ;
terms:conformsTo ;
oboInOwl:hasRelatedSynonym "cervix columnar epithelium" ;
rdfs:comment "A glandular epithelium that is part of a uterine cervix." ;
rdfs:label "Cervix Glandulair Epitheel"@nl ,
"Cervix Glandular Epithelium"@en ,
"Epitelio Ghiandolare della Cervice"@it ;
rdfs:seeAlso obo:NCIT_C54414 ;
ontology:associatedDisease obo:MONDO_0002974 ;
ontology:hasSemanticArea obo:NCIT_C13717 .
### http://purl.obolibrary.org/obo/UBERON_0012251
obo:UBERON_0012251 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:CervixAnatomicalEntity ;
skos:broaderTransitive obo:UBERON_0004801 ;
terms:conformsTo ;
oboInOwl:hasExactSynonym "ectocervical epithelium; exocervical epithelium" ;
rdfs:comment "A epithelium that is part of a ectocervix." ;
rdfs:label "Epitelio Esocervicale"@it ,
"Exocervicaal Epitheel"@nl ,
"Exocervical Epithelium"@en ;
ontology:associatedDisease obo:MONDO_0002974 ;
ontology:hasSemanticArea obo:NCIT_C13717 .
### http://purl.obolibrary.org/obo/UBERON_0012253
obo:UBERON_0012253 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:CervixAnatomicalEntity ;
skos:broaderTransitive obo:UBERON_0004801 ;
terms:conformsTo ;
oboInOwl:hasBroadSynonym "squamocolumnar junction" ;
oboInOwl:hasExactSynonym "squamocolumnar junction of uterine cervix; squamo-columnar junction of uterine cervix" ;
rdfs:comment "Region of cervical epithelium where columnar epithelium of endocervic and the stratified non-keratinising squamous epithelium of the ectocervic meet" ;
rdfs:label "Cervical Squamo-Columnar Junction"@en ,
"Cervicale Squamocolumnaire Overgang"@nl ,
"Giunzione Squamocolonnare Cervicale"@it ;
rdfs:seeAlso obo:NCIT_C97148 ;
ontology:associatedDisease obo:MONDO_0002974 ;
ontology:hasSemanticArea obo:NCIT_C13717 .
### http://purl.obolibrary.org/obo/UBERON_0012652
obo:UBERON_0012652 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:ColonAnatomicalEntity ;
terms:conformsTo ;
rdfs:comment "The subdivision of the digestive tract that consists of the colon and the rectum"@nl ;
rdfs:label "Colorectum"@en ,
"Colorectum"@nl ,
"Coloretto"@it ;
rdfs:seeAlso obo:NCIT_C54189 ;
ontology:associatedDisease obo:MONDO_0002032 ;
ontology:hasSemanticArea obo:NCIT_C13717 .
### http://purl.obolibrary.org/obo/UBERON_0013482
obo:UBERON_0013482 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:CeliacAnatomicalEntity ;
skos:broaderTransitive obo:UBERON_0002114 ;
terms:conformsTo ;
oboInOwl:hasExactSynonym "duodenal crypt; duodenal crypt of Lieberkuhn" ;
rdfs:comment "An intestinal crypt that is located in the duodenum. [Definition Source: http://orcid.org/0000-0002-6601-2165]"@en ;
rdfs:label "Cripta di Lieberkuhn del Duodeno"@it ,
"Crypt of Lieberkuhn of Duodenum"@en ,
"Crypte van Lieberkuhn van de Twaalfvingerige Darm"@nl ;
rdfs:seeAlso obo:NCIT_C33565 ;
ontology:associatedDisease obo:MONDO_0005130 ;
ontology:hasOntobeeAnnotation """database_cross_reference: EMAPA:37838; FMA:269063
has_exact_synonym: duodenal crypt; duodenal crypt of Lieberkuhn
has_obo_namespace: uberon
http://www.geneontology.org/formats/oboInOwl#id: UBERON:0013482
in_subset: http://purl.obolibrary.org/obo/uberon/core#pheno_slim""" ;
ontology:hasSemanticArea obo:NCIT_C13717 .
### http://purl.obolibrary.org/obo/UBERON_0013644
obo:UBERON_0013644 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:CeliacAnatomicalEntity ;
skos:broaderTransitive obo:UBERON_0002114 ;
terms:conformsTo ;
oboInOwl:hasExactSynonym "duodenal cap; bulbus (duodenum); ampulla duodeni; duodenal cap viewed radiologically; bulbus duodeni; ampulla (duodenum); ampulla of duodenum" ;
rdfs:comment "The very first part of the duodenum which is slightly dilated." ;
rdfs:label "Ampolla Duodenale"@it ,
"Duodenal Ampulla"@en ,
"Duodenale Ampulla"@nl ;
ontology:associatedDisease obo:MONDO_0005130 ;
ontology:hasSemanticArea obo:NCIT_C13717 .
### http://purl.obolibrary.org/obo/UBERON_0015834
obo:UBERON_0015834 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:CeliacAnatomicalEntity ;
skos:broaderTransitive obo:UBERON_0002114 ;
terms:conformsTo ;
oboInOwl:hasExactSynonym "lamina propria of duodenum; duodenal lamina propria; lamina propria mucosae of duodenum" ;
rdfs:comment "A lamina propria that is part of a duodenum." ;
rdfs:label "Duodenal Lamina Propria"@en ,
"Duodenal Lamina Propria"@nl ,
"Lamina Propria del Duodeno"@it ;
ontology:associatedDisease obo:MONDO_0005130 ;
ontology:hasSemanticArea obo:NCIT_C13717 .
### http://purl.obolibrary.org/obo/UBERON_0035764
obo:UBERON_0035764 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:LungAnatomicalEntity ;
terms:conformsTo ;
rdfs:comment "Pulmonary lymph nodes are a common and underrecognized cause of a peripheral SPN. These lymph nodes are usually found at the bifurcation of the bronchi, before the fourth branch, where they are referred to as peribronchial lymph nodes. Lymph nodes are occasionally present within the lung parenchyma, where they are designated intrapulmonary lymph nodes (IPLNs) or perifissural nodules (PFNs)."@en ;
rdfs:label "Linfonodo Polmonare"@it ,
"Pulmonale Lymfeknoop"@nl ,
"Pulmonary Lymph Node"@en ;
ontology:associatedDisease obo:MONDO_0008903 ;
ontology:hasSNOMEDCode "T080000" ,
"T083110" ,
"T083120" ,
"T083200" ,
"T083210" ;
ontology:hasSemanticArea obo:NCIT_C13717 ;
ontology:internalNotes "previous SNOMED was T08311, T08312, T08320, T08321, T08000" .
### http://purl.obolibrary.org/obo/UBERON_0036214
obo:UBERON_0036214 rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:ColonAnatomicalEntity ;
skos:broaderTransitive obo:UBERON_0001155 ;
terms:conformsTo ;
oboInOwl:hasRelatedSynonym "rectosigmoid region"@en ;
rdfs:comment "An anatomical junction that is between the sigmoid colon and rectum."@en ;
rdfs:label "Giunzione Rettosigmoidea"@it ,
"Rectosigmoid Junctie"@nl ,
"Rectosigmoid Junction"@en ;
rdfs:seeAlso obo:NCIT_C54188 ;
ontology:associatedDisease obo:MONDO_0002032 ;
ontology:hasSNOMEDCode "T679210" ;
ontology:hasSemanticArea obo:NCIT_C13717 .
### https://hpo.jax.org/app/browse/term/HP:0003581
rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:Onset ;
terms:conformsTo ;
rdfs:comment "Onset of disease manifestations in adulthood, defined here as at the age of 16 years or later. [Defintion Source: HPO probison]"@en ;
rdfs:label "Adult Onset"@en ,
"Gruppo d'Età Adulta"@it ,
"Volwassen Aanvang"@nl ;
ontology:hasSemanticArea ontology:general .
### https://hpo.jax.org/app/browse/term/HP:0003584
rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:Onset ;
skos:broaderTransitive ;
terms:conformsTo ;
rdfs:comment "A type of adult onset with onset of symptoms after the age of 60 years. [Defintion Source: HPO probison]"@en ;
rdfs:label "Gruppo d'Età Tarda"@it ,
"Laat Begin"@nl ,
"Late Onset"@en ;
ontology:hasSemanticArea ontology:general .
### https://hpo.jax.org/app/browse/term/HP:0003596
rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:Onset ;
skos:broaderTransitive ;
terms:conformsTo ;
rdfs:comment "A type of adult onset with onset of symptoms at the age of 40 to 60 years. [Defintion Source: HPO probison]"@en ;
rdfs:label "Begin op Middelbare Leeftijd"@nl ,
"Gruppo d'Età della Mezza Età"@it ,
"Midlle Age Onset"@en ;
ontology:hasSemanticArea ontology:general .
### https://hpo.jax.org/app/browse/term/HP:0011462
rdf:type owl:NamedIndividual ,
skos:Concept ,
ontology:Onset ;
skos:broaderTransitive ;
terms:conformsTo ;
rdfs:comment "Onset of disease at the age of between 16 and 40 years. [Defintion Source: HPO DDD:hfirth]"@en ;
rdfs:label "Begin bij Jonge Volwassenen"@nl ,
"Gruppo d'Età Giovane Adulto"@it ,
"Young Adult Onset"@en ;
ontology:hasSemanticArea ontology:general .
### https://orcid.org/0000-0001-7307-4607